Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QBS25_RS04950 Genome accession   NZ_CP121859
Coordinates   1005065..1006504 (-) Length   479 a.a.
NCBI ID   WP_005356667.1    Uniprot ID   -
Organism   Aeromonas veronii strain LOID 15995     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1000065..1011504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS25_RS04920 - 1000333..1001073 (+) 741 WP_139411572.1 KDGP aldolase family protein -
  QBS25_RS04925 - 1001181..1003085 (+) 1905 WP_274160642.1 PTS sugar transporter subunit IIA -
  QBS25_RS04930 npr 1003103..1003375 (-) 273 WP_005336318.1 PTS phosphocarrier protein NPr -
  QBS25_RS04935 rapZ 1003396..1004262 (-) 867 WP_263085239.1 RNase adapter RapZ -
  QBS25_RS04940 ptsN 1004308..1004754 (-) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QBS25_RS04945 hpf 1004757..1005044 (-) 288 WP_005336323.1 ribosome hibernation promoting factor -
  QBS25_RS04950 rpoN/rpoN1 1005065..1006504 (-) 1440 WP_005356667.1 RNA polymerase factor sigma-54 Machinery gene
  QBS25_RS04955 lptB 1006570..1007295 (-) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  QBS25_RS04960 lptA 1007299..1007826 (-) 528 WP_040068817.1 lipopolysaccharide transport periplasmic protein LptA -
  QBS25_RS04965 lptC 1007813..1008373 (-) 561 WP_047438732.1 LPS export ABC transporter periplasmic protein LptC -
  QBS25_RS04970 kdsC 1008370..1008924 (-) 555 WP_279490111.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  QBS25_RS04975 - 1008924..1009919 (-) 996 WP_123172219.1 KpsF/GutQ family sugar-phosphate isomerase -
  QBS25_RS04980 mlaF 1010127..1010927 (+) 801 WP_252412772.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53759.67 Da        Isoelectric Point: 4.3281

>NTDB_id=814849 QBS25_RS04950 WP_005356667.1 1005065..1006504(-) (rpoN/rpoN1) [Aeromonas veronii strain LOID 15995]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVELED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=814849 QBS25_RS04950 WP_005356667.1 1005065..1006504(-) (rpoN/rpoN1) [Aeromonas veronii strain LOID 15995]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAGGAGCAGATGCCG
GACGAGTTGCCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACCGCCCAGAGCGCGGGCCCCATCCACGATGG
GGAAGATAGCGTCTATCAGGGAGAGACCACCGAAAACCTGCAGGATTATCTGTTGTGGCAGATGCGGCTCACACCGTTCA
GCGATGTGGATGCCGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGAGCTGGAGGAT
ATCCAGGCTGCCGTCACAAGCGATGACGTAGAGGTGGAACTCGATGAGGTCGAGGCGGTACTCAAGCGGGTGCAGCACTT
CGATCCGGTCGGCATTGCTGCCCGTTCTGTGCAGGAGTGTTTGCTCATCCAGCTGGACCAGTATGACCCGCAGACCCCCT
GGCTCAACGAGGCCAAAGAGGTGATCCTCGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAAGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAGCCGCGCCCCGGCAATGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTCGAGCTCAATCCCG
ACTCTGCCCCCCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGCAACGCCCGTAGCAGCACCGACACCCAGTTT
ATCCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAAAGTCGCAATGACACCCTGCTGAAAGTGGCCAG
TTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAATGACATCGCCG
AAGCGGTAGAGATGCATGAGTCGACCATCTCCCGGGTGACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGTCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.988

100

0.491