Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | YZOS03_RS01570 | Genome accession | NZ_AP023185 |
| Coordinates | 334281..334796 (+) | Length | 171 a.a. |
| NCBI ID | WP_064368814.1 | Uniprot ID | - |
| Organism | Vibrio alginolyticus strain YZOS-03 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 329281..339796
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YZOS03_RS01550 (YZOS03_02630) | - | 329424..331985 (-) | 2562 | WP_025768081.1 | PBP1A family penicillin-binding protein | - |
| YZOS03_RS01555 (YZOS03_02640) | pilM | 332130..333146 (+) | 1017 | WP_017821733.1 | type IV pilus assembly protein PilM | Machinery gene |
| YZOS03_RS01560 (YZOS03_02650) | pilN | 333130..333705 (+) | 576 | WP_064368815.1 | PilN domain-containing protein | Machinery gene |
| YZOS03_RS01565 (YZOS03_02660) | pilO | 333698..334291 (+) | 594 | WP_017633532.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| YZOS03_RS01570 (YZOS03_02670) | pilP | 334281..334796 (+) | 516 | WP_064368814.1 | pilus assembly protein PilP | Machinery gene |
| YZOS03_RS01575 (YZOS03_02680) | pilQ | 334822..336567 (+) | 1746 | WP_206949731.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| YZOS03_RS01580 (YZOS03_02690) | aroK | 336755..337273 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| YZOS03_RS01585 (YZOS03_02700) | aroB | 337306..338406 (+) | 1101 | WP_005381318.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19095.27 Da Isoelectric Point: 10.4342
>NTDB_id=81482 YZOS03_RS01570 WP_064368814.1 334281..334796(+) (pilP) [Vibrio alginolyticus strain YZOS-03]
MTSKSLLLVLMGSLLMGCQANDESLTDFIRGVETQARREVEKLKPADKYVAVTYAPEVQRTPFELPKEATIATQPVARKD
CWQPPSRRRTGKLEKFPLSQLRLKGVMGMDNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHSYLLINETLPDGLGC
WQKRKVKLALR
MTSKSLLLVLMGSLLMGCQANDESLTDFIRGVETQARREVEKLKPADKYVAVTYAPEVQRTPFELPKEATIATQPVARKD
CWQPPSRRRTGKLEKFPLSQLRLKGVMGMDNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHSYLLINETLPDGLGC
WQKRKVKLALR
Nucleotide
Download Length: 516 bp
>NTDB_id=81482 YZOS03_RS01570 WP_064368814.1 334281..334796(+) (pilP) [Vibrio alginolyticus strain YZOS-03]
ATGACAAGTAAGTCTTTGTTGCTGGTACTGATGGGTTCTCTATTGATGGGCTGCCAGGCGAATGATGAATCATTGACGGA
TTTTATTCGAGGAGTGGAAACACAGGCGCGTCGAGAGGTCGAGAAGCTTAAGCCCGCAGACAAATATGTTGCAGTCACGT
ACGCACCGGAAGTACAGCGTACACCCTTTGAATTACCCAAAGAAGCCACCATCGCGACTCAGCCAGTTGCAAGAAAAGAT
TGTTGGCAACCGCCCTCAAGAAGGCGAACTGGCAAATTAGAAAAATTCCCACTAAGCCAATTACGTTTGAAAGGTGTCAT
GGGCATGGATAACACGGTTTCTGGCCTCGTTCAGGCTCCCAATGGCACCGTCTATAAAGTTAAGCCGGGTCAATACCTCG
GACGCAATAATGGCAAAGTGACCCATGTCAGCCACTCCTATTTGTTGATTAATGAAACGTTGCCCGACGGCTTAGGATGT
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
ATGACAAGTAAGTCTTTGTTGCTGGTACTGATGGGTTCTCTATTGATGGGCTGCCAGGCGAATGATGAATCATTGACGGA
TTTTATTCGAGGAGTGGAAACACAGGCGCGTCGAGAGGTCGAGAAGCTTAAGCCCGCAGACAAATATGTTGCAGTCACGT
ACGCACCGGAAGTACAGCGTACACCCTTTGAATTACCCAAAGAAGCCACCATCGCGACTCAGCCAGTTGCAAGAAAAGAT
TGTTGGCAACCGCCCTCAAGAAGGCGAACTGGCAAATTAGAAAAATTCCCACTAAGCCAATTACGTTTGAAAGGTGTCAT
GGGCATGGATAACACGGTTTCTGGCCTCGTTCAGGCTCCCAATGGCACCGTCTATAAAGTTAAGCCGGGTCAATACCTCG
GACGCAATAATGGCAAAGTGACCCATGTCAGCCACTCCTATTTGTTGATTAATGAAACGTTGCCCGACGGCTTAGGATGT
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio campbellii strain DS40M4 |
84.211 |
100 |
0.842 |
| pilP | Vibrio cholerae strain A1552 |
56.977 |
100 |
0.573 |