Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | YZOS03_RS01560 | Genome accession | NZ_AP023185 |
| Coordinates | 333130..333705 (+) | Length | 191 a.a. |
| NCBI ID | WP_064368815.1 | Uniprot ID | - |
| Organism | Vibrio alginolyticus strain YZOS-03 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 328130..338705
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YZOS03_RS01545 (YZOS03_02620) | oxyR | 328459..329370 (+) | 912 | WP_005381326.1 | DNA-binding transcriptional regulator OxyR | - |
| YZOS03_RS01550 (YZOS03_02630) | - | 329424..331985 (-) | 2562 | WP_025768081.1 | PBP1A family penicillin-binding protein | - |
| YZOS03_RS01555 (YZOS03_02640) | pilM | 332130..333146 (+) | 1017 | WP_017821733.1 | type IV pilus assembly protein PilM | Machinery gene |
| YZOS03_RS01560 (YZOS03_02650) | pilN | 333130..333705 (+) | 576 | WP_064368815.1 | PilN domain-containing protein | Machinery gene |
| YZOS03_RS01565 (YZOS03_02660) | pilO | 333698..334291 (+) | 594 | WP_017633532.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| YZOS03_RS01570 (YZOS03_02670) | pilP | 334281..334796 (+) | 516 | WP_064368814.1 | pilus assembly protein PilP | Machinery gene |
| YZOS03_RS01575 (YZOS03_02680) | pilQ | 334822..336567 (+) | 1746 | WP_206949731.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| YZOS03_RS01580 (YZOS03_02690) | aroK | 336755..337273 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| YZOS03_RS01585 (YZOS03_02700) | aroB | 337306..338406 (+) | 1101 | WP_005381318.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 22335.84 Da Isoelectric Point: 7.4657
>NTDB_id=81480 YZOS03_RS01560 WP_064368815.1 333130..333705(+) (pilN) [Vibrio alginolyticus strain YZOS-03]
MLYRINLLPWRESQREEHRRRFISLVALGMLVAVGIQWGIGKFFEYQQDQQQDRLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVTEKKLEAQRG
MLYRINLLPWRESQREEHRRRFISLVALGMLVAVGIQWGIGKFFEYQQDQQQDRLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVTEKKLEAQRG
Nucleotide
Download Length: 576 bp
>NTDB_id=81480 YZOS03_RS01560 WP_064368815.1 333130..333705(+) (pilN) [Vibrio alginolyticus strain YZOS-03]
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAGTCAAAGAGAAGAGCACCGACGTCGTTTCATCAGTTTGGTCGC
ATTAGGCATGTTGGTCGCTGTTGGCATCCAGTGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAACAACAGGATC
GGCTCGATTACCTCACTCACTACATTGCCGAACTCGACCAGCGTATTGAAGCAATGAAAATTGCAGAGCAAGAGCACAGC
AAAATCCTCGAACGCCTAAAGGTTGTTGAAGGTTTACAAAACGGACGAAACAAAACGACCGAGTTCATGAACTTAATGCC
TGCCGTTATCCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCTGGGATCTCTGATA
GCACTCCAAAACTTGCCACGATGCTGGACAACATGGAGCGCTCGGCCAAGTTGAACGACGTAGAAATGCATTCCATCGTT
CACGGCAAAGCCCGTTTTGGGAAAGAGTTTCAAACATTCAAAGTGTCTTTCATGTTCAAAGTAACGGAGAAGAAATTGGA
GGCTCAACGTGGTTGA
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAGTCAAAGAGAAGAGCACCGACGTCGTTTCATCAGTTTGGTCGC
ATTAGGCATGTTGGTCGCTGTTGGCATCCAGTGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAACAACAGGATC
GGCTCGATTACCTCACTCACTACATTGCCGAACTCGACCAGCGTATTGAAGCAATGAAAATTGCAGAGCAAGAGCACAGC
AAAATCCTCGAACGCCTAAAGGTTGTTGAAGGTTTACAAAACGGACGAAACAAAACGACCGAGTTCATGAACTTAATGCC
TGCCGTTATCCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCTGGGATCTCTGATA
GCACTCCAAAACTTGCCACGATGCTGGACAACATGGAGCGCTCGGCCAAGTTGAACGACGTAGAAATGCATTCCATCGTT
CACGGCAAAGCCCGTTTTGGGAAAGAGTTTCAAACATTCAAAGTGTCTTTCATGTTCAAAGTAACGGAGAAGAAATTGGA
GGCTCAACGTGGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
82.199 |
100 |
0.822 |
| pilN | Vibrio cholerae strain A1552 |
62.712 |
92.67 |
0.581 |