Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QBS18_RS00675 Genome accession   NZ_CP121856
Coordinates   136992..138431 (+) Length   479 a.a.
NCBI ID   WP_005356667.1    Uniprot ID   -
Organism   Aeromonas veronii strain LOID 16013     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 131992..143431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS18_RS00645 mlaF 132569..133369 (-) 801 WP_252412772.1 phospholipid ABC transporter ATP-binding protein MlaF -
  QBS18_RS00650 - 133577..134572 (+) 996 WP_123172219.1 KpsF/GutQ family sugar-phosphate isomerase -
  QBS18_RS00655 kdsC 134572..135126 (+) 555 WP_279490111.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  QBS18_RS00660 lptC 135123..135683 (+) 561 WP_047438732.1 LPS export ABC transporter periplasmic protein LptC -
  QBS18_RS00665 lptA 135670..136197 (+) 528 WP_040068817.1 lipopolysaccharide transport periplasmic protein LptA -
  QBS18_RS00670 lptB 136201..136926 (+) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  QBS18_RS00675 rpoN/rpoN1 136992..138431 (+) 1440 WP_005356667.1 RNA polymerase factor sigma-54 Machinery gene
  QBS18_RS00680 hpf 138452..138739 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  QBS18_RS00685 ptsN 138742..139188 (+) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QBS18_RS00690 rapZ 139234..140100 (+) 867 WP_263085239.1 RNase adapter RapZ -
  QBS18_RS00695 npr 140121..140393 (+) 273 WP_005336318.1 PTS phosphocarrier protein NPr -
  QBS18_RS00700 - 140411..142315 (-) 1905 WP_274160642.1 PTS sugar transporter subunit IIA -
  QBS18_RS00705 - 142423..143163 (-) 741 WP_139411572.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53759.67 Da        Isoelectric Point: 4.3281

>NTDB_id=814813 QBS18_RS00675 WP_005356667.1 136992..138431(+) (rpoN/rpoN1) [Aeromonas veronii strain LOID 16013]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVELED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=814813 QBS18_RS00675 WP_005356667.1 136992..138431(+) (rpoN/rpoN1) [Aeromonas veronii strain LOID 16013]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAGGAGCAGATGCCG
GACGAGTTGCCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACCGCCCAGAGCGCGGGCCCCATCCACGATGG
GGAAGATAGCGTCTATCAGGGAGAGACCACCGAAAACCTGCAGGATTATCTGTTGTGGCAGATGCGGCTCACACCGTTCA
GCGATGTGGATGCCGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGAGCTGGAGGAT
ATCCAGGCTGCCGTCACAAGCGATGACGTAGAGGTGGAACTCGATGAGGTCGAGGCGGTACTCAAGCGGGTGCAGCACTT
CGATCCGGTCGGCATTGCTGCCCGTTCTGTGCAGGAGTGTTTGCTCATCCAGCTGGACCAGTATGACCCGCAGACCCCCT
GGCTCAACGAGGCCAAAGAGGTGATCCTCGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAAGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAGCCGCGCCCCGGCAATGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTCGAGCTCAATCCCG
ACTCTGCCCCCCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGCAACGCCCGTAGCAGCACCGACACCCAGTTT
ATCCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAAAGTCGCAATGACACCCTGCTGAAAGTGGCCAG
TTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAATGACATCGCCG
AAGCGGTAGAGATGCATGAGTCGACCATCTCCCGGGTGACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGTCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.988

100

0.491