Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QBS11_RS00520 Genome accession   NZ_CP121851
Coordinates   110105..111544 (+) Length   479 a.a.
NCBI ID   WP_279491550.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 14022     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 105105..116544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS11_RS00490 mlaF 105682..106482 (-) 801 WP_005336343.1 phospholipid ABC transporter ATP-binding protein MlaF -
  QBS11_RS00495 - 106690..107685 (+) 996 WP_058058615.1 KpsF/GutQ family sugar-phosphate isomerase -
  QBS11_RS00500 kdsC 107685..108239 (+) 555 WP_075115821.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  QBS11_RS00505 lptC 108236..108796 (+) 561 WP_005336338.1 LPS export ABC transporter periplasmic protein LptC -
  QBS11_RS00510 lptA 108783..109310 (+) 528 WP_040068817.1 lipopolysaccharide transport periplasmic protein LptA -
  QBS11_RS00515 lptB 109314..110039 (+) 726 WP_139411570.1 LPS export ABC transporter ATP-binding protein -
  QBS11_RS00520 rpoN/rpoN1 110105..111544 (+) 1440 WP_279491550.1 RNA polymerase factor sigma-54 Machinery gene
  QBS11_RS00525 hpf 111565..111852 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  QBS11_RS00530 ptsN 111855..112301 (+) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QBS11_RS00535 rapZ 112347..113213 (+) 867 WP_139742551.1 RNase adapter RapZ -
  QBS11_RS00540 npr 113234..113506 (+) 273 WP_005336318.1 PTS phosphocarrier protein NPr -
  QBS11_RS00545 - 113524..115428 (-) 1905 WP_058057522.1 PTS sugar transporter subunit IIA -
  QBS11_RS00550 - 115536..116276 (-) 741 WP_058058617.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53731.66 Da        Isoelectric Point: 4.3442

>NTDB_id=814758 QBS11_RS00520 WP_279491550.1 110105..111544(+) (rpoN/rpoN1) [Aeromonas veronii strain ANYA 14022]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQSFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=814758 QBS11_RS00520 WP_279491550.1 110105..111544(+) (rpoN/rpoN1) [Aeromonas veronii strain ANYA 14022]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAGGAGCAGATGCCG
GATGAGTTGCCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACAGCCCAGAGCGCGGGCCCCATCCACGATGG
GGAAGATAGCGTCTATCAGGGAGAGACCACCGAAAACCTGCAGGATTATCTGCTGTGGCAGATGCGGCTCACACCTTTCA
GCGATGTGGATGCCGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGCGCTGGAGGAT
ATCCAGGCTGCAGTCACCAGCGATGACGTAGAGGTGGAACTCGATGAGGTCGAGGCGGTACTCAAGCGGGTGCAGCACTT
CGATCCAGTCGGCATTGCTGCCCGTTCGGTGCAGGAGTGTTTGCTCATCCAGCTGGATCAGTATGACCCGCAGACCCCCT
GGCTCAACGAGGCCAAGGAGGTGATCCTCGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGTACCCTCGCCCGCAAG
ACAAAACTCAAGGAGAGCGATCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAGCCGCGCCCAGGCAATGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTCGAGCTCAATCCCG
ACTCCGCCCCCCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGCAACGCCCGCAGCAGCACCGACACCCAGTTT
ATCCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAAAGTCGCAATGACACCCTGCTGAAAGTGGCCAG
TTGCATTGTCGAGCAGCAACAGAGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAATGACATCGCCG
AAGCGGTGGAGATGCATGAGTCGACCATCTCCCGGGTGACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.184

100

0.493