Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   QBS09_RS15920 Genome accession   NZ_CP121848
Coordinates   3342837..3343871 (+) Length   344 a.a.
NCBI ID   WP_005340354.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 14430     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3337837..3348871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS09_RS15890 - 3338503..3339699 (+) 1197 WP_113740087.1 NupC/NupG family nucleoside CNT transporter -
  QBS09_RS15895 - 3339801..3340220 (-) 420 WP_201914209.1 DUF4426 domain-containing protein -
  QBS09_RS15900 yggU 3340264..3340566 (-) 303 WP_021230942.1 DUF167 family protein YggU -
  QBS09_RS15905 - 3340566..3341117 (-) 552 WP_005340343.1 YggT family protein -
  QBS09_RS15910 proC 3341129..3341953 (-) 825 WP_042053316.1 pyrroline-5-carboxylate reductase -
  QBS09_RS15915 - 3342096..3342797 (-) 702 WP_139461353.1 YggS family pyridoxal phosphate-dependent enzyme -
  QBS09_RS15920 pilT 3342837..3343871 (+) 1035 WP_005340354.1 type IVa pilus ATPase TapT Machinery gene
  QBS09_RS15925 pilU 3343900..3345009 (+) 1110 WP_129504783.1 type IVa pilus ATPase TapU Machinery gene
  QBS09_RS15930 yaaA 3345057..3345830 (+) 774 WP_005340358.1 peroxide stress protein YaaA -
  QBS09_RS15935 - 3346025..3346450 (+) 426 WP_005340360.1 hypothetical protein -
  QBS09_RS15940 - 3346811..3347302 (-) 492 WP_201914207.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  QBS09_RS15945 arfB 3347335..3347751 (-) 417 WP_021230947.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  QBS09_RS15950 glnK 3347953..3348291 (+) 339 WP_005341406.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38273.03 Da        Isoelectric Point: 6.7440

>NTDB_id=814725 QBS09_RS15920 WP_005340354.1 3342837..3343871(+) (pilT) [Aeromonas veronii strain ANYA 14430]
MDITELLAFSVKHKASDLHLSAGVPPMIRVDGEVRKINLPALEHREVHALIYDIMNDHQRKELEENFEVDFSFEVPNLAR
FRVNAFQQARGSGAVFRTIPSTVLSLEDLDAPEIFRKIAEFPRGLVLVTGPTGSGKSTTLAAMVNYINENFHHHILTIED
PIEFVHENKRCLVNQREVHRDTKSFSNALRSALREDPDIILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPGAEKDMVRSMLSESLRAVISQTLLKRIGGGRVAAHEIMMGIPAVRNLIREDKIAQLYSVIQTGMTHGMQTMDQSL
KQLVSRGVVASLDAKAKAVDPNSI

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=814725 QBS09_RS15920 WP_005340354.1 3342837..3343871(+) (pilT) [Aeromonas veronii strain ANYA 14430]
ATGGATATCACAGAGTTATTGGCTTTCAGTGTAAAGCATAAAGCCTCGGATCTACACCTCTCGGCCGGGGTTCCCCCGAT
GATCAGGGTTGATGGTGAGGTTCGCAAGATCAATTTGCCCGCCCTGGAACACCGGGAAGTGCATGCCCTCATTTACGACA
TCATGAACGATCATCAGCGCAAGGAGCTGGAGGAGAACTTCGAGGTCGACTTCTCGTTCGAGGTGCCCAATCTGGCCCGT
TTCCGGGTCAACGCCTTCCAGCAGGCGCGCGGCTCGGGCGCGGTATTTCGTACCATCCCCAGCACGGTGCTGAGCCTCGA
GGATCTCGATGCGCCGGAGATTTTCCGCAAGATCGCCGAGTTCCCGCGGGGTCTGGTACTGGTGACCGGCCCTACCGGCT
CGGGTAAATCGACCACCCTGGCGGCCATGGTCAACTACATCAACGAGAACTTCCATCACCACATCCTCACCATCGAGGAT
CCCATCGAGTTCGTCCACGAGAACAAGCGCTGTCTGGTGAACCAGCGGGAAGTTCATCGGGATACCAAGAGCTTCAGCAA
CGCCCTGCGCTCGGCACTGCGGGAAGACCCGGACATCATTCTGGTGGGCGAGATGCGCGACCTTGAGACCATTCGTTTGG
CCATGACGGCCGCCGAAACCGGCCACCTGGTGTTTGGCACCCTGCACACCTCGTCGGCGGCCAAGACCATCGACCGTATC
ATCGACGTCTTCCCCGGCGCGGAGAAGGACATGGTGCGCTCCATGCTCTCCGAATCCCTGCGGGCGGTCATCTCCCAGAC
CCTGCTCAAGCGCATTGGCGGTGGCCGGGTGGCGGCCCACGAGATCATGATGGGCATTCCGGCGGTGCGTAACCTCATTC
GGGAGGACAAGATCGCCCAGCTTTACTCGGTGATCCAGACCGGGATGACCCACGGTATGCAGACCATGGATCAGAGCCTC
AAGCAGCTGGTGAGCCGCGGTGTGGTGGCATCCCTCGATGCCAAGGCCAAGGCCGTCGATCCCAACAGCATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

77.326

100

0.773
  pilT Acinetobacter baylyi ADP1

77.551

99.709

0.773
  pilT Acinetobacter baumannii D1279779

77.035

100

0.77
  pilT Acinetobacter baumannii strain A118

77.035

100

0.77
  pilT Pseudomonas stutzeri DSM 10701

76.163

100

0.762
  pilT Pseudomonas aeruginosa PAK

75.291

100

0.753
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

75.964

97.965

0.744
  pilT Vibrio cholerae strain A1552

75.964

97.965

0.744
  pilT Legionella pneumophila strain Lp02

72.941

98.837

0.721
  pilT Legionella pneumophila strain ERS1305867

72.941

98.837

0.721
  pilT Neisseria meningitidis 8013

69.855

100

0.701
  pilT Neisseria gonorrhoeae MS11

69.565

100

0.698
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.754

99.419

0.515
  pilU Vibrio cholerae strain A1552

42.899

100

0.43
  pilU Pseudomonas stutzeri DSM 10701

40.58

100

0.407
  pilU Acinetobacter baylyi ADP1

40.462

100

0.407