Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QBS37_RS07425 Genome accession   NZ_CP121845
Coordinates   1491704..1493143 (+) Length   479 a.a.
NCBI ID   WP_124928327.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 15694     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1486704..1498143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS37_RS07395 mlaF 1487281..1488081 (-) 801 WP_139730931.1 phospholipid ABC transporter ATP-binding protein MlaF -
  QBS37_RS07400 - 1488289..1489284 (+) 996 WP_005356672.1 KpsF/GutQ family sugar-phosphate isomerase -
  QBS37_RS07405 kdsC 1489284..1489838 (+) 555 WP_101530526.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  QBS37_RS07410 lptC 1489835..1490395 (+) 561 WP_005336338.1 LPS export ABC transporter periplasmic protein LptC -
  QBS37_RS07415 lptA 1490382..1490909 (+) 528 WP_026034862.1 lipopolysaccharide transport periplasmic protein LptA -
  QBS37_RS07420 lptB 1490913..1491638 (+) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  QBS37_RS07425 rpoN/rpoN1 1491704..1493143 (+) 1440 WP_124928327.1 RNA polymerase factor sigma-54 Machinery gene
  QBS37_RS07430 hpf 1493164..1493451 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  QBS37_RS07435 ptsN 1493454..1493900 (+) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QBS37_RS07440 rapZ 1493946..1494812 (+) 867 WP_139440301.1 RNase adapter RapZ -
  QBS37_RS07445 npr 1494833..1495105 (+) 273 WP_005336318.1 PTS phosphocarrier protein NPr -
  QBS37_RS07450 degS 1495297..1496421 (-) 1125 WP_139440300.1 outer membrane-stress sensor serine endopeptidase DegS -
  QBS37_RS07455 - 1496531..1497892 (-) 1362 WP_005336295.1 Do family serine endopeptidase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53685.64 Da        Isoelectric Point: 4.3442

>NTDB_id=814659 QBS37_RS07425 WP_124928327.1 1491704..1493143(+) (rpoN/rpoN1) [Aeromonas veronii strain ANYA 15694]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKFMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=814659 QBS37_RS07425 WP_124928327.1 1491704..1493143(+) (rpoN/rpoN1) [Aeromonas veronii strain ANYA 15694]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAGGAGCAGATGCCG
GACGAGTTGCCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACCGCCCAGAGCGCGGGCCCCATCCACGATGG
GGAAGATAGCGTCTATCAGGGTGAAACTACCGAAAACCTGCAGGATTATCTGCTGTGGCAGATGCGGCTCACACCGTTCA
GCGATGTGGATGCAGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGCGCTGGAGGAT
ATCCAGGCTGCCGTTACCAGCGATGACGTAGAGGTGGAACTCGATGAGGTCGAGGCGGTACTCAAGCGGGTTCAGCACTT
CGATCCGGTCGGCATTGCTGCCCGTTCTGTGCAGGAGTGTTTGCTGATCCAGCTGGATCAGTATGACCCGCAGACCCCCT
GGCTCAACGAGGCCAAGGAGGTGATCCTCGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAAGAGAGCGACCTCAAGGAGGTGCTGGATTTGATCCAGCTGCTGGAGCCGCGCCCCGGCAACGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCTCAGTGGTCAAGAAGGGTAGCAAGTGGGTGGTCGAGCTCAATCCTG
ACTCCGCCCCCCGCATTCGGGTCAACGAGACCTACGCCGCCATGGCCCGCAACGCCCGCAGCAGCACCGACACCCAGTTT
ATTCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCTTGGAAAGTCGCAATGACACCCTGCTGAAAGTGGCCAG
TTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAATGACATCGCCG
AAGCGGTAGAGATGCATGAGTCGACCATCTCCCGGGTGACGACCCAGAAGTTCATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.793

100

0.489