Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   R8775_RS02915 Genome accession   NZ_AP026915
Coordinates   549949..550215 (+) Length   88 a.a.
NCBI ID   WP_001820593.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700005     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 544949..555215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8775_RS02895 (PC0005_05670) - 545216..545713 (+) 498 WP_000619945.1 N-acetyltransferase -
  R8775_RS02900 (PC0005_05680) pheT 545790..548195 (+) 2406 WP_050233402.1 phenylalanine--tRNA ligase subunit beta -
  R8775_RS02905 (PC0005_05690) - 548263..549264 (-) 1002 WP_000597970.1 endonuclease/exonuclease/phosphatase family protein -
  R8775_RS02910 - 549420..549865 (+) 446 Protein_575 helix-turn-helix domain-containing protein -
  R8775_RS02915 (PC0005_05720) HI0659 549949..550215 (+) 267 WP_001820593.1 helix-turn-helix domain-containing protein Machinery gene
  R8775_RS02920 (PC0005_05730) metE 550476..552725 (+) 2250 WP_050204694.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  R8775_RS02925 (PC0005_05740) metF 552789..553655 (+) 867 WP_050204693.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9670.12 Da        Isoelectric Point: 4.3934

>NTDB_id=81460 R8775_RS02915 WP_001820593.1 549949..550215(+) (HI0659) [Streptococcus pneumoniae strain PZ900700005]
MEGCPSELFSKEEILESDMRVAIMSELIEARHEQGINQRKLEELSGVSQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=81460 R8775_RS02915 WP_001820593.1 549949..550215(+) (HI0659) [Streptococcus pneumoniae strain PZ900700005]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATTATGAGCGAGTT
GATTGAAGCTAGACATGAACAAGGAATCAATCAGAGAAAGCTAGAAGAACTCAGTGGAGTGAGTCAACCTGTCATAGCTA
GGATGGAAACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

55.844

87.5

0.489

Multiple sequence alignment