Detailed information NTG0081443

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: H1204_RS01600
• Genome accession: NZ_AP023179
• Coordinates: 359327..360484 (-)
• Length: 385 a.a.
• NCBI ID: WP_180729538.1
• Uniprot ID: A0A7I8C4G2
• Organism: Paraburkholderia sp. PGU19
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 354327..365484

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1204_RS01580 (PPGU19_003180)	leuA	354456..356114 (-)	1659	WP_180729534.1	2-isopropylmalate synthase	-
H1204_RS01585 (PPGU19_003190)	ybiB	356628..357596 (-)	969	WP_180729535.1	DNA-binding protein YbiB	-
H1204_RS01590 (PPGU19_003200)	-	357862..358560 (+)	699	WP_180729536.1	fumarylacetoacetate hydrolase family protein	-
H1204_RS01595 (PPGU19_003210)	maiA	358595..359239 (+)	645	WP_180729537.1	maleylacetoacetate isomerase	-
H1204_RS01600 (PPGU19_003220)	pilA	359327..360484 (-)	1158	WP_180729538.1	signal recognition particle-docking protein FtsY	Machinery gene
H1204_RS01605 (PPGU19_003230)	rsmD	360776..361414 (+)	639	WP_180729539.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
H1204_RS01610 (PPGU19_003240)	coaD	361532..362041 (+)	510	WP_180729540.1	pantetheine-phosphate adenylyltransferase	-
H1204_RS01615 (PPGU19_003250)	-	362186..362443 (+)	258	WP_079498069.1	YfhL family 4Fe-4S dicluster ferredoxin	-
H1204_RS01620 (PPGU19_003260)	hisC	362501..363580 (-)	1080	WP_180729541.1	histidinol-phosphate transaminase	-
H1204_RS01625 (PPGU19_003270)	pth	363615..364217 (-)	603	WP_180730835.1	aminoacyl-tRNA hydrolase	-
H1204_RS01630 (PPGU19_003280)	-	364338..364949 (-)	612	WP_180729542.1	50S ribosomal protein L25/general stress protein Ctc	-

Sequence

Protein

• Length: 385 a.a.
• Molecular weight: 41193.87 Da
• Isoelectric Point: 4.6668

>NTDB_id=81443 H1204_RS01600 WP_180729538.1 359327..360484(-) (pilA) [Paraburkholderia sp. PGU19]
MFSFFKRFKGSKAPDDTPEAPQADSADVGMQDVAEPKAPAAARSQAVPDSADAPEFDPNYVPDAADFEDADDEAAEIIPP
PVPEAAEKRSWLTRLRSGLSKTSSSITGIFVGAKIDEDLYEELETALLMSDAGVDATEFLLEALREKVRAERLTDPQQVK
GALRTLLVELLKPLEKSLTLGHYQPTVMMIAGVNGAGKTTSIGKLAKHMQHFNQSVLLAAGDTFRAAAREQLAIWGQRNN
VTVVQQESGDPAAVIFDAVGAARARKINVVMADTAGRLPTQLHLMEELRKVKRVVGKAMDGAPHEVLLVIDANTGQNALA
QVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAEEFSDALLG

Nucleotide

• Length: 1158 bp

>NTDB_id=81443 H1204_RS01600 WP_180729538.1 359327..360484(-) (pilA) [Paraburkholderia sp. PGU19]
ATGTTCAGCTTTTTCAAACGATTCAAGGGTTCCAAGGCGCCCGACGACACGCCTGAAGCGCCGCAGGCCGATTCCGCCGA
CGTCGGCATGCAGGACGTGGCCGAGCCGAAAGCACCCGCCGCCGCGCGTTCGCAAGCCGTCCCTGACTCGGCCGATGCGC
CTGAATTCGATCCCAATTACGTCCCCGACGCCGCCGACTTCGAAGATGCGGACGACGAAGCCGCTGAAATCATCCCGCCG
CCAGTGCCCGAAGCAGCCGAAAAGCGCTCGTGGCTCACGCGCCTTCGCAGCGGCCTGTCGAAAACCAGTTCGAGCATCAC
AGGCATCTTCGTCGGCGCGAAGATCGACGAAGACCTGTATGAAGAACTGGAAACGGCGCTGCTGATGTCCGACGCGGGCG
TCGACGCGACCGAGTTTCTGCTCGAAGCACTACGCGAGAAAGTGCGCGCCGAGCGCCTCACCGATCCGCAGCAGGTCAAG
GGCGCGCTGCGCACGCTGCTGGTCGAGCTGCTGAAGCCGCTGGAAAAGTCGCTGACGCTCGGCCATTACCAGCCGACCGT
GATGATGATCGCAGGCGTCAACGGCGCAGGCAAAACCACCAGCATCGGCAAGCTTGCGAAGCATATGCAGCACTTCAATC
AGTCTGTGCTGCTCGCTGCGGGCGACACGTTCCGCGCCGCCGCGCGCGAACAGCTCGCGATCTGGGGCCAGCGCAACAAC
GTGACCGTCGTGCAGCAGGAAAGCGGCGACCCCGCCGCGGTGATTTTCGATGCCGTCGGTGCCGCGCGCGCCCGCAAGAT
CAACGTGGTGATGGCGGACACGGCCGGCCGTCTGCCGACGCAGCTTCATCTGATGGAAGAACTGCGCAAGGTGAAGCGCG
TGGTCGGCAAGGCGATGGACGGCGCGCCGCATGAGGTGCTGCTCGTCATCGACGCCAACACCGGTCAGAACGCGCTCGCG
CAAGTGAAGGCTTTCGACGATGCGCTCGGCCTGACTGGCCTGATCGTGACGAAGCTCGATGGCACGGCGAAGGGCGGCAT
TCTCGCGGCGATCGCGCGGCAACGCCCCGTGCCTGTGTACTTTATCGGAGTCGGCGAGAAGGTCGAAGACTTGCAGCCGT
TCAGCGCCGAAGAGTTTTCGGATGCGTTGCTGGGTTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (104-164)

• SRP54-type protein, GTPase domain (SRP54) (185-384)

3D structure

• AlphaFold DB: A0A7I8C4G2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	52.163	100	0.564