Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QBS21_RS00520 Genome accession   NZ_CP121817
Coordinates   111732..113171 (+) Length   479 a.a.
NCBI ID   WP_005336331.1    Uniprot ID   A0A0T6N7F3
Organism   Aeromonas veronii strain ANYA 19170     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 106732..118171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS21_RS00490 mlaF 107309..108109 (-) 801 WP_005336343.1 phospholipid ABC transporter ATP-binding protein MlaF -
  QBS21_RS00495 - 108317..109312 (+) 996 WP_058057518.1 KpsF/GutQ family sugar-phosphate isomerase -
  QBS21_RS00500 kdsC 109312..109866 (+) 555 WP_107684358.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  QBS21_RS00505 lptC 109863..110423 (+) 561 WP_047438732.1 LPS export ABC transporter periplasmic protein LptC -
  QBS21_RS00510 lptA 110410..110937 (+) 528 WP_040068817.1 lipopolysaccharide transport periplasmic protein LptA -
  QBS21_RS00515 lptB 110941..111666 (+) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  QBS21_RS00520 rpoN/rpoN1 111732..113171 (+) 1440 WP_005336331.1 RNA polymerase factor sigma-54 Machinery gene
  QBS21_RS00525 hpf 113192..113479 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  QBS21_RS00530 ptsN 113482..113928 (+) 447 WP_107684357.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QBS21_RS00535 rapZ 113974..114840 (+) 867 WP_021231839.1 RNase adapter RapZ -
  QBS21_RS00540 npr 114861..115133 (+) 273 WP_005336318.1 PTS phosphocarrier protein NPr -
  QBS21_RS00545 - 115151..117055 (-) 1905 WP_118854500.1 PTS sugar transporter subunit IIA -
  QBS21_RS00550 - 117163..117903 (-) 741 WP_107684355.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53701.64 Da        Isoelectric Point: 4.3442

>NTDB_id=814406 QBS21_RS00520 WP_005336331.1 111732..113171(+) (rpoN/rpoN1) [Aeromonas veronii strain ANYA 19170]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=814406 QBS21_RS00520 WP_005336331.1 111732..113171(+) (rpoN/rpoN1) [Aeromonas veronii strain ANYA 19170]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAAGAGCAGATGCCG
GATGAGTTGCCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACCGCCCAGAGCGCGGGCCCCATCCACGATGG
GGAAGATAGCGTCTATCAGGGAGAGACCACCGAAAACCTGCAGGATTATCTGTTGTGGCAGATGCGGCTCACACCGTTCA
GCGATGTGGATGCCGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGCGCTGGAGGAT
ATCCAGGCTGCCGTCACCAGCGATGACGTAGAGGTGGAACTCGATGAGGTCGAGGCGGTACTCAAGCGGGTGCAGCACTT
CGATCCGGTCGGCATTGCTGCCCGTTCGGTGCAGGAGTGTTTGCTGATCCAGCTGGATCAATATGACCCGCAGACCCCCT
GGCTCAACGAGGCCAAGGAGGTGATCCTCGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAGCCGCGCCCCGGCAACGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTCGAGCTCAATCCCG
ATTCCGCCCCGCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGCAACGCCCGCAGCAGCACGGATACCCAATTC
ATCCGCTCCCACCTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTTGAGAGCCGCAACGATACCCTGTTGAAAGTAGCCAG
CTGTATTGTCGAGCAGCAGCAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAATGACATCGCCG
AAGCGGTAGAGATGCATGAGTCGACCATCTCCCGGGTGACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6N7F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.988

100

0.491