Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   R8775_RS00455 Genome accession   NZ_AP026915
Coordinates   73648..74418 (+) Length   256 a.a.
NCBI ID   WP_000616162.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 68648..79418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8775_RS00440 (PC0005_00800) - 70703..71140 (+) 438 WP_000076485.1 CoA-binding protein -
  R8775_RS00445 (PC0005_00810) - 71323..72333 (-) 1011 WP_050244738.1 YeiH family protein -
  R8775_RS00450 (PC0005_00820) - 72482..73651 (+) 1170 WP_000366345.1 pyridoxal phosphate-dependent aminotransferase -
  R8775_RS00455 (PC0005_00830) recO 73648..74418 (+) 771 WP_000616162.1 DNA repair protein RecO Machinery gene
  R8775_RS00460 (PC0005_00840) plsX 74415..75407 (+) 993 WP_050311686.1 phosphate acyltransferase PlsX -
  R8775_RS00465 (PC0005_00850) - 75413..75646 (+) 234 WP_000659556.1 acyl carrier protein -
  R8775_RS00470 (PC0005_00860) - 75683..75982 (+) 300 Protein_87 transposase family protein -
  R8775_RS00475 (PC0005_00870) blpU 76184..76414 (+) 231 WP_001093075.1 bacteriocin-like peptide BlpU -
  R8775_RS00480 - 76417..76542 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29788.29 Da        Isoelectric Point: 5.3615

>NTDB_id=81439 R8775_RS00455 WP_000616162.1 73648..74418(+) (recO) [Streptococcus pneumoniae strain PZ900700005]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=81439 R8775_RS00455 WP_000616162.1 73648..74418(+) (recO) [Streptococcus pneumoniae strain PZ900700005]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGTCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.609

100

0.996

Multiple sequence alignment