Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QBS33_RS02200 Genome accession   NZ_CP121816
Coordinates   440667..442106 (-) Length   479 a.a.
NCBI ID   WP_279497034.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 19953     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 435667..447106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS33_RS02170 - 435935..436675 (+) 741 WP_279497031.1 KDGP aldolase family protein -
  QBS33_RS02175 - 436783..438687 (+) 1905 WP_279497032.1 PTS sugar transporter subunit IIA -
  QBS33_RS02180 npr 438705..438977 (-) 273 WP_279497033.1 PTS phosphocarrier protein NPr -
  QBS33_RS02185 rapZ 438998..439864 (-) 867 WP_139435099.1 RNase adapter RapZ -
  QBS33_RS02190 ptsN 439910..440356 (-) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QBS33_RS02195 hpf 440359..440646 (-) 288 WP_005336323.1 ribosome hibernation promoting factor -
  QBS33_RS02200 rpoN/rpoN1 440667..442106 (-) 1440 WP_279497034.1 RNA polymerase factor sigma-54 Machinery gene
  QBS33_RS02205 lptB 442172..442897 (-) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  QBS33_RS02210 lptA 442901..443428 (-) 528 WP_040068817.1 lipopolysaccharide transport periplasmic protein LptA -
  QBS33_RS02215 lptC 443415..443975 (-) 561 WP_005336338.1 LPS export ABC transporter periplasmic protein LptC -
  QBS33_RS02220 kdsC 443972..444526 (-) 555 WP_144715392.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  QBS33_RS02225 - 444526..445521 (-) 996 WP_058057518.1 KpsF/GutQ family sugar-phosphate isomerase -
  QBS33_RS02230 mlaF 445729..446529 (+) 801 WP_005336343.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53687.61 Da        Isoelectric Point: 4.3442

>NTDB_id=814385 QBS33_RS02200 WP_279497034.1 440667..442106(-) (rpoN/rpoN1) [Aeromonas veronii strain ANYA 19953]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDSQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=814385 QBS33_RS02200 WP_279497034.1 440667..442106(-) (rpoN/rpoN1) [Aeromonas veronii strain ANYA 19953]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAGGAGCAGATGCCG
GACGAGTTGCCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACCGCCCAGAGCGCGGGCCCCATCCACGATGG
GGAAGATAGCGTCTATCAGGGAGAGACCACCGAAAACCTGCAGGATTATTTGTTGTGGCAGATGCGGCTCACACCGTTCA
GCGATGTGGATGCCGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGCGCTGGAGGAT
ATCCAGGCTGCCGTCACAAGCGATGACGTAGAGGTGGAACTCGATGAGGTCGAGGCGGTACTCAAGCGGGTGCAGCACTT
CGATCCGGTCGGCATTGCTGCCCGTTCTGTGCAGGAGTGTTTGCTCATCCAGCTGGATCAGTATGACCCGCAGACCCCCT
GGCTCAACGAGGCAAAAGAGGTGATCCTCGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAAGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAGCCGCGCCCCGGCAATGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCTCCGTGGTCAAGAAGGGTAGCAAGTGGGTGGTCGAGCTCAATCCCG
ACTCCGCCCCCCGCATTCGGGTCAACGAGACCTATGCCGCCATGGCCCGCAACGCCCGCAGCAGCACCGACTCCCAGTTT
ATTCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAAAGTCGCAATGACACCCTGCTGAAAGTGGCCAG
TTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAATGACATCGCCG
AAGCGGTAGAGATGCATGAGTCGACCATCTCTCGGGTGACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.988

100

0.491