Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QBS10_RS06790 Genome accession   NZ_CP121802
Coordinates   1432420..1433859 (+) Length   479 a.a.
NCBI ID   WP_206220873.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain BOND 14504     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1427420..1438859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS10_RS06760 mlaF 1427997..1428797 (-) 801 WP_005305979.1 phospholipid ABC transporter ATP-binding protein MlaF -
  QBS10_RS06765 - 1429005..1430000 (+) 996 WP_024943091.1 KpsF/GutQ family sugar-phosphate isomerase -
  QBS10_RS06770 kdsC 1430000..1430554 (+) 555 WP_017766397.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  QBS10_RS06775 lptC 1430551..1431111 (+) 561 WP_024943092.1 LPS export ABC transporter periplasmic protein LptC -
  QBS10_RS06780 lptA 1431098..1431625 (+) 528 WP_279452714.1 lipopolysaccharide transport periplasmic protein LptA -
  QBS10_RS06785 lptB 1431629..1432354 (+) 726 WP_005305964.1 LPS export ABC transporter ATP-binding protein -
  QBS10_RS06790 rpoN/rpoN1 1432420..1433859 (+) 1440 WP_206220873.1 RNA polymerase factor sigma-54 Machinery gene
  QBS10_RS06795 hpf 1433881..1434168 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  QBS10_RS06800 ptsN 1434171..1434617 (+) 447 WP_005305951.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QBS10_RS06805 rapZ 1434660..1435526 (+) 867 WP_005305946.1 RNase adapter RapZ -
  QBS10_RS06810 npr 1435547..1435819 (+) 273 WP_005305943.1 PTS phosphocarrier protein NPr -
  QBS10_RS06815 - 1435835..1437739 (-) 1905 WP_279452155.1 PRD domain-containing protein -
  QBS10_RS06820 - 1437844..1438584 (-) 741 WP_279452156.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53878.85 Da        Isoelectric Point: 4.3584

>NTDB_id=814361 QBS10_RS06790 WP_206220873.1 1432420..1433859(+) (rpoN/rpoN1) [Aeromonas dhakensis strain BOND 14504]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENDVQETSPVDQVDVSQLDSSDAMAQDQMP
DELPVDTTWEEVYSAGTAQSAGPIHDGEDSIYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVSLED
IQTAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAREVILEHMDLLGNRDYRTLARK
TKLKENDLKEVLDLIQQLEPRPGNGVIQSESQYVIPDVSVVKKGNKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=814361 QBS10_RS06790 WP_206220873.1 1432420..1433859(+) (rpoN/rpoN1) [Aeromonas dhakensis strain BOND 14504]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAAAATGACG
TTCAGGAGACCAGCCCGGTCGACCAAGTGGACGTCAGCCAGCTCGATTCCAGCGATGCCATGGCCCAGGACCAGATGCCG
GACGAACTGCCGGTGGATACCACCTGGGAAGAGGTCTATTCGGCAGGCACGGCTCAGAGCGCAGGCCCCATCCATGACGG
GGAAGACAGCATCTATCAGGGTGAGACCACCGAGAACCTGCAGGACTACCTGTTGTGGCAGATGCGCTTGACCCCGTTCA
GCGACGTGGATGCCGCCATCGCCCTCGCCATCATAGATGCCATCGACGAATCCGGTTACCTGACGGTGTCGCTTGAGGAT
ATTCAGACGGCGGTGAGCAGCGAGGATGTCGAGGTGGAACTCGATGAAGTGGAGGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGCTCGGTGCAGGAGTGCCTGCTGATCCAGCTGGGCCAGTACTCCCCTGATCTGCCCT
GGCTCAACGAAGCCAGGGAGGTGATCCTCGAGCACATGGATCTGCTCGGCAACCGCGATTACCGCACCCTGGCCCGCAAG
ACCAAGCTGAAGGAGAACGACCTCAAGGAGGTGCTGGATCTCATCCAGCAGCTGGAGCCGCGGCCCGGAAACGGCGTCAT
CCAGAGCGAATCCCAGTACGTGATCCCGGATGTTTCCGTGGTCAAGAAGGGCAACAAGTGGGTGGTCGAGCTCAACCCTG
ACTCTGCCCCGCGCATTCGGGTCAACGAGACCTATGCCGCCATGGCCAGACAGGCCCGCACCAGTCAGGATACCCAGTTC
ATCCGCTCCCACCTGCAGGAAGCCAAGTGGTTCATCAAGAGTCTGGAGAGTCGCAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAATACGGTGAAGAGGCCATGAAACCCATGGTGCTCAACGACATCGCCG
AAGCGGTGGAGATGCACGAGTCGACCATCTCGCGGGTGACCACCCAGAAGTACATGCACACGCCGCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCGGAGAATCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.669

100

0.484