Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QBS35_RS18990 Genome accession   NZ_CP121800
Coordinates   4127674..4129113 (-) Length   479 a.a.
NCBI ID   WP_201879798.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain DAMIAN 19342     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4122674..4134113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS35_RS18960 - 4122949..4123689 (+) 741 WP_201879804.1 KDGP aldolase family protein -
  QBS35_RS18965 - 4123794..4125698 (+) 1905 WP_201879801.1 PRD domain-containing protein -
  QBS35_RS18970 npr 4125714..4125986 (-) 273 WP_005305943.1 PTS phosphocarrier protein NPr -
  QBS35_RS18975 rapZ 4126007..4126873 (-) 867 WP_005305946.1 RNase adapter RapZ -
  QBS35_RS18980 ptsN 4126916..4127362 (-) 447 WP_005305951.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QBS35_RS18985 hpf 4127365..4127652 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  QBS35_RS18990 rpoN/rpoN1 4127674..4129113 (-) 1440 WP_201879798.1 RNA polymerase factor sigma-54 Machinery gene
  QBS35_RS18995 lptB 4129179..4129904 (-) 726 WP_005305964.1 LPS export ABC transporter ATP-binding protein -
  QBS35_RS19000 lptA 4129908..4130435 (-) 528 WP_010635928.1 lipopolysaccharide transport periplasmic protein LptA -
  QBS35_RS19005 lptC 4130422..4130982 (-) 561 WP_054543610.1 LPS export ABC transporter periplasmic protein LptC -
  QBS35_RS19010 kdsC 4130979..4131533 (-) 555 WP_017766397.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  QBS35_RS19015 - 4131533..4132528 (-) 996 WP_005305976.1 KpsF/GutQ family sugar-phosphate isomerase -
  QBS35_RS19020 mlaF 4132736..4133536 (+) 801 WP_005305979.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53874.90 Da        Isoelectric Point: 4.3584

>NTDB_id=814318 QBS35_RS18990 WP_201879798.1 4127674..4129113(-) (rpoN/rpoN1) [Aeromonas dhakensis strain DAMIAN 19342]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENDVQETSPVDQVDVSQLDSSDAMAQDQMP
DELPVDTTWEEVYSAGTAQSAGPIHDGEDSIYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVSLED
IQAAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAREVILEHMDLLGNRDYRTLARK
TKLKENDLKEVLDLIQQLEPRPGNGVIQIESQYVIPDVSVVKKGNKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=814318 QBS35_RS18990 WP_201879798.1 4127674..4129113(-) (rpoN/rpoN1) [Aeromonas dhakensis strain DAMIAN 19342]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAAAACGACG
TTCAGGAGACCAGCCCGGTCGACCAGGTGGACGTCAGCCAGCTCGATTCCAGCGATGCCATGGCCCAGGACCAAATGCCG
GACGAACTGCCGGTGGATACCACCTGGGAAGAGGTCTATTCGGCCGGCACGGCCCAGAGCGCAGGCCCCATCCATGACGG
GGAAGACAGCATCTATCAGGGTGAGACTACCGAGAACCTGCAGGACTACCTGTTGTGGCAGATGCGCTTGACCCCGTTCA
GCGACGTGGATGCCGCCATCGCCCTCGCCATCATAGATGCTATCGACGAATCCGGTTATCTGACGGTGTCGCTTGAGGAT
ATTCAGGCGGCGGTGAGCAGCGAGGATGTCGAGGTGGAACTCGATGAAGTGGAGGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGCTCGGTGCAGGAGTGCCTGCTGATCCAGCTGGGCCAGTACTCCCCTGACTTGCCCT
GGCTCAACGAAGCCAGGGAGGTGATCCTCGAGCACATGGATCTGCTCGGCAACCGCGATTACCGCACCCTGGCCCGCAAG
ACCAAGCTGAAGGAGAACGACCTCAAGGAGGTGCTGGATCTCATTCAGCAGCTGGAGCCGCGGCCCGGTAATGGCGTCAT
CCAGATCGAATCCCAGTACGTGATCCCGGATGTTTCCGTGGTCAAGAAGGGCAACAAGTGGGTGGTCGAGCTCAACCCGG
ACTCGGCCCCGCGCATCCGGGTCAATGAGACCTATGCCGCCATGGCCAGACAGGCCCGCACCAGTCAGGATACCCAGTTC
ATCCGCTCCCACCTGCAGGAAGCCAAGTGGTTCATCAAGAGTCTGGAGAGCCGCAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTCTTCGAATACGGTGAAGAGGCCATGAAACCCATGGTGCTCAACGACATCGCCG
AAGCGGTGGAGATGCACGAGTCGACCATCTCGCGGGTGACCACCCAGAAGTACATGCACACGCCGCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCGGAGAATCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.866

100

0.486