Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QBS05_RS02145 Genome accession   NZ_CP121795
Coordinates   406599..408038 (-) Length   479 a.a.
NCBI ID   WP_010635929.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain DAMIAN 12594     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 401599..413038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS05_RS02115 - 401874..402614 (+) 741 WP_279462456.1 KDGP aldolase family protein -
  QBS05_RS02120 - 402719..404623 (+) 1905 WP_017766400.1 PRD domain-containing protein -
  QBS05_RS02125 npr 404639..404911 (-) 273 WP_005305943.1 PTS phosphocarrier protein NPr -
  QBS05_RS02130 rapZ 404932..405798 (-) 867 WP_005305946.1 RNase adapter RapZ -
  QBS05_RS02135 ptsN 405841..406287 (-) 447 WP_005305951.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QBS05_RS02140 hpf 406290..406577 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  QBS05_RS02145 rpoN/rpoN1 406599..408038 (-) 1440 WP_010635929.1 RNA polymerase factor sigma-54 Machinery gene
  QBS05_RS02150 lptB 408104..408829 (-) 726 WP_279462457.1 LPS export ABC transporter ATP-binding protein -
  QBS05_RS02155 lptA 408833..409360 (-) 528 WP_010635928.1 lipopolysaccharide transport periplasmic protein LptA -
  QBS05_RS02160 lptC 409347..409907 (-) 561 WP_010635927.1 LPS export ABC transporter periplasmic protein LptC -
  QBS05_RS02165 kdsC 409904..410458 (-) 555 WP_017766397.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  QBS05_RS02170 - 410458..411453 (-) 996 WP_005305976.1 KpsF/GutQ family sugar-phosphate isomerase -
  QBS05_RS02175 mlaF 411661..412461 (+) 801 WP_005305979.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53848.82 Da        Isoelectric Point: 4.3584

>NTDB_id=814250 QBS05_RS02145 WP_010635929.1 406599..408038(-) (rpoN/rpoN1) [Aeromonas dhakensis strain DAMIAN 12594]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENDVQETSPVDQVDVSQLDSSDAMAQDQMP
DELPVDTTWEEVYSAGTAQSAGPIHDGEDSIYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVSLED
IQAAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAREVILEHMDLLGNRDYRTLARK
TKLKENDLKEVLDLIQQLEPRPGNGVIQSESQYVIPDVSVVKKGNKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=814250 QBS05_RS02145 WP_010635929.1 406599..408038(-) (rpoN/rpoN1) [Aeromonas dhakensis strain DAMIAN 12594]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAAAACGACG
TTCAGGAGACCAGCCCGGTCGACCAGGTGGACGTCAGCCAGCTCGATTCCAGCGATGCCATGGCCCAGGACCAGATGCCG
GACGAACTGCCGGTGGATACCACCTGGGAAGAGGTCTATTCGGCAGGCACGGCTCAGAGCGCAGGCCCCATCCATGACGG
GGAAGACAGCATCTATCAGGGTGAGACCACCGAGAACCTGCAGGACTACCTGTTGTGGCAGATGCGCTTGACCCCGTTCA
GCGACGTGGATGCCGCCATCGCCCTCGCCATCATAGATGCCATCGACGAATCCGGTTATCTGACGGTGTCGCTTGAGGAT
ATTCAGGCGGCGGTGAGCAGCGAGGATGTCGAGGTGGAACTCGATGAAGTGGAGGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGCTCGGTGCAGGAGTGCCTGCTGATCCAGCTGGGCCAGTACTCCCCTGATCTGCCCT
GGCTCAACGAAGCCAGGGAGGTGATCCTCGAGCACATGGATCTGCTCGGCAACCGCGATTACCGCACCCTGGCCCGCAAG
ACCAAGCTGAAGGAGAACGACCTCAAGGAGGTGCTGGATCTCATCCAGCAGCTGGAGCCGCGGCCCGGAAACGGCGTCAT
CCAGAGCGAATCCCAGTACGTGATCCCGGATGTTTCCGTGGTCAAGAAGGGCAACAAGTGGGTGGTCGAGCTCAACCCTG
ACTCTGCCCCGCGCATTCGGGTCAACGAGACCTATGCCGCCATGGCCAGACAGGCCCGCACCAGTCAGGATACCCAGTTC
ATCCGCTCCCACCTGCAGGAAGCCAAGTGGTTCATTAAGAGTCTGGAGAGTCGCAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTCTTCGAATACGGTGAAGAGGCCATGAAACCCATGGTGCTCAACGACATCGCCG
AAGCGGTGGAGATGCACGAGTCGACCATCTCGCGGGTGACCACCCAGAAGTACATGCACACGCCGCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCGGAGAATCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.866

100

0.486