Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   QBJ73_RS16610 Genome accession   NZ_CP121776
Coordinates   3467968..3468369 (-) Length   133 a.a.
NCBI ID   WP_058952512.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AYTCM     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3462968..3473369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBJ73_RS16580 (QBJ73_16590) tadA 3463224..3463724 (-) 501 WP_058951875.1 tRNA adenosine(34) deaminase TadA -
  QBJ73_RS16585 (QBJ73_16595) - 3463730..3464851 (-) 1122 WP_058951874.1 enoyl-CoA hydratase/isomerase family protein -
  QBJ73_RS16590 (QBJ73_16600) ung 3464848..3465561 (-) 714 WP_004696856.1 uracil-DNA glycosylase -
  QBJ73_RS16595 (QBJ73_16605) - 3465603..3466199 (-) 597 WP_004696854.1 6-carboxytetrahydropterin synthase -
  QBJ73_RS16600 (QBJ73_16610) gspK 3466322..3467272 (-) 951 WP_058951873.1 type II secretion system minor pseudopilin GspK -
  QBJ73_RS16605 (QBJ73_16615) xcpW 3467351..3467971 (-) 621 WP_058951872.1 type II secretion system minor pseudopilin GspJ Machinery gene
  QBJ73_RS16610 (QBJ73_16620) xcpV 3467968..3468369 (-) 402 WP_058952512.1 type II secretion system minor pseudopilin GspI Machinery gene
  QBJ73_RS16615 (QBJ73_16625) - 3468404..3468973 (-) 570 WP_058951871.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QBJ73_RS16620 (QBJ73_16630) - 3468986..3469600 (-) 615 WP_004696845.1 TetR/AcrR family transcriptional regulator -
  QBJ73_RS16625 (QBJ73_16635) - 3469646..3470419 (-) 774 WP_058951870.1 TatD family hydrolase -
  QBJ73_RS16630 (QBJ73_16640) - 3470446..3470787 (-) 342 WP_058869739.1 PilZ domain-containing protein -
  QBJ73_RS16635 (QBJ73_16645) - 3470802..3471785 (-) 984 WP_058951869.1 DNA polymerase III subunit delta' -
  QBJ73_RS16640 (QBJ73_16650) kdsB 3471805..3472566 (-) 762 WP_058951868.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14675.76 Da        Isoelectric Point: 9.6943

>NTDB_id=814187 QBJ73_RS16610 WP_058952512.1 3467968..3468369(-) (xcpV) [Acinetobacter johnsonii strain AYTCM]
MKHYFINPRSGFTLLEVMVALAIFATAAVALTKVGMQYTQSTAHAILRTKAQFVALNEISMMEINRDWLQGTASKQITQQ
GETWQIDKSAQATISTNVQRVNVQVSLVNTETGKVDSGVTSLVFFNHRDGSQP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=814187 QBJ73_RS16610 WP_058952512.1 3467968..3468369(-) (xcpV) [Acinetobacter johnsonii strain AYTCM]
ATGAAACATTATTTCATTAATCCTCGCTCAGGATTTACATTGCTGGAAGTGATGGTGGCACTGGCTATTTTTGCTACAGC
AGCGGTCGCTTTAACCAAAGTGGGTATGCAATATACTCAGTCTACAGCCCATGCCATCTTGCGTACCAAGGCACAATTTG
TTGCCTTGAATGAAATTTCTATGATGGAAATCAATCGTGATTGGCTACAAGGCACGGCCTCTAAACAAATCACCCAACAA
GGTGAAACTTGGCAAATTGATAAATCAGCGCAGGCAACGATTAGTACTAATGTGCAACGCGTCAATGTACAAGTGAGCTT
GGTGAATACAGAAACTGGAAAAGTAGATTCAGGTGTTACGAGTTTAGTTTTTTTTAACCATCGTGATGGAAGCCAACCAT
GA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(48-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

75.214

87.97

0.662