Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   QBJ73_RS08455 Genome accession   NZ_CP121776
Coordinates   1779782..1780105 (+) Length   107 a.a.
NCBI ID   WP_004692786.1    Uniprot ID   N9D026
Organism   Acinetobacter johnsonii strain AYTCM     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1774782..1785105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBJ73_RS08430 (QBJ73_08435) hemC 1775445..1776365 (+) 921 WP_010325719.1 hydroxymethylbilane synthase -
  QBJ73_RS08435 (QBJ73_08440) - 1776378..1777157 (+) 780 WP_010325720.1 uroporphyrinogen-III synthase -
  QBJ73_RS08440 (QBJ73_08445) - 1777154..1777996 (+) 843 WP_010325721.1 hypothetical protein -
  QBJ73_RS08445 (QBJ73_08450) - 1778001..1779194 (+) 1194 WP_058952363.1 hypothetical protein -
  QBJ73_RS08450 (QBJ73_08455) - 1779202..1779630 (+) 429 WP_010325723.1 thioesterase family protein -
  QBJ73_RS08455 (QBJ73_08460) hns 1779782..1780105 (+) 324 WP_004692786.1 H-NS family nucleoid-associated regulatory protein Regulator
  QBJ73_RS08460 (QBJ73_08465) gspN 1780303..1781013 (+) 711 WP_010325724.1 type II secretion system protein N -
  QBJ73_RS08465 (QBJ73_08470) - 1781013..1781837 (+) 825 WP_010325725.1 type II secretion system protein N -
  QBJ73_RS08470 (QBJ73_08475) gspD 1781877..1784237 (+) 2361 WP_010325726.1 type II secretion system secretin GspD -
  QBJ73_RS08475 (QBJ73_08480) - 1784325..1785068 (+) 744 WP_010325727.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12025.75 Da        Isoelectric Point: 9.5383

>NTDB_id=814171 QBJ73_RS08455 WP_004692786.1 1779782..1780105(+) (hns) [Acinetobacter johnsonii strain AYTCM]
MPDISNLSVEELKRLQIEAEALIASKKDQAIEDAYTQINAIAENVGLSIEQILEFGATKRKKGTRKSVEPRYRNKGNAAE
TWTGRGKQPRWLVAQLEKGAKLEDFLI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=814171 QBJ73_RS08455 WP_004692786.1 1779782..1780105(+) (hns) [Acinetobacter johnsonii strain AYTCM]
ATGCCAGATATTAGTAATTTATCCGTAGAAGAGTTAAAGCGTCTACAAATCGAAGCGGAAGCTTTAATTGCATCTAAAAA
AGATCAAGCAATTGAAGATGCTTATACCCAAATTAACGCGATTGCGGAAAATGTAGGCTTAAGCATTGAGCAAATTTTAG
AGTTTGGCGCGACTAAGCGTAAAAAAGGCACACGTAAGTCGGTTGAACCGCGTTACCGTAACAAAGGCAATGCTGCTGAG
ACATGGACTGGCCGTGGTAAGCAACCACGTTGGTTGGTGGCTCAGTTAGAAAAAGGTGCGAAGCTTGAAGATTTTTTAAT
CTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9D026

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

86.792

99.065

0.86