Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   QBJ73_RS04575 Genome accession   NZ_CP121776
Coordinates   949227..950084 (-) Length   285 a.a.
NCBI ID   WP_148825457.1    Uniprot ID   A0AAJ6LGC5
Organism   Acinetobacter johnsonii strain AYTCM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 944227..955084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBJ73_RS04555 (QBJ73_04560) - 944493..945569 (+) 1077 WP_004977846.1 PhoH family protein -
  QBJ73_RS04560 (QBJ73_04565) ybeY 945627..946106 (+) 480 WP_183175858.1 rRNA maturation RNase YbeY -
  QBJ73_RS04565 (QBJ73_04570) - 946208..946618 (+) 411 WP_308469556.1 hypothetical protein -
  QBJ73_RS04570 (QBJ73_04575) - 946789..948936 (-) 2148 WP_308469557.1 TonB-dependent siderophore receptor -
  QBJ73_RS04575 (QBJ73_04580) tonB2 949227..950084 (-) 858 WP_148825457.1 energy transducer TonB Machinery gene
  QBJ73_RS04580 (QBJ73_04585) - 950345..951022 (+) 678 WP_004977854.1 hypothetical protein -
  QBJ73_RS04585 (QBJ73_04590) - 951178..951888 (+) 711 WP_148825455.1 DUF3108 domain-containing protein -
  QBJ73_RS04590 (QBJ73_04595) - 951979..952554 (+) 576 WP_004691243.1 xanthine phosphoribosyltransferase -
  QBJ73_RS04595 (QBJ73_04600) - 952830..953462 (+) 633 WP_234963415.1 GAF domain-containing protein -
  QBJ73_RS04600 (QBJ73_04605) - 953481..953893 (+) 413 Protein_882 GGDEF domain-containing protein -
  QBJ73_RS04605 (QBJ73_04610) - 954095..954469 (+) 375 WP_148825454.1 hypothetical protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32585.06 Da        Isoelectric Point: 6.3661

>NTDB_id=814157 QBJ73_RS04575 WP_148825457.1 949227..950084(-) (tonB2) [Acinetobacter johnsonii strain AYTCM]
MPLAHDWWKDPIFTATVVLAVFLHLVVLTLQFAMPQENDAAVKEIAVTLRPSDQKIENADFLAQADQQGSGTFRESHRMS
SDMPAPMLEQSTGEQQRETLEQIQQKRELNFEEKLLMTTLSWQKQAEDNQRKKAMEEMNSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDISAAYLEKFRQKVEFYGNRYYPEAAKQQRLAGEVRLMVILNASGGIRAIRLIDSSGHEML
DEAAKASVRKAAPFGGFDAKMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 858 bp        

>NTDB_id=814157 QBJ73_RS04575 WP_148825457.1 949227..950084(-) (tonB2) [Acinetobacter johnsonii strain AYTCM]
ATGCCTTTGGCTCATGATTGGTGGAAAGACCCAATTTTTACAGCGACCGTTGTGCTGGCGGTGTTTTTGCATCTTGTAGT
TTTGACTTTGCAATTTGCGATGCCTCAAGAAAATGATGCGGCAGTGAAAGAAATTGCGGTTACCTTGCGCCCTTCTGATC
AAAAAATTGAAAATGCAGATTTTTTAGCGCAAGCCGATCAACAAGGTTCAGGGACCTTTCGTGAGTCACATCGCATGTCG
AGTGACATGCCCGCACCGATGCTTGAGCAAAGTACAGGCGAACAGCAGCGTGAAACTTTAGAACAGATCCAACAAAAACG
TGAGCTGAATTTTGAAGAAAAACTGTTAATGACGACTTTGAGTTGGCAAAAACAAGCTGAGGATAACCAGCGCAAAAAAG
CCATGGAAGAAATGAACAGTCAGTTTCAAGCCAAAGCAGCAATGGTGGCCAGCCTTGAAGCGCAATATTTACAACGCCAA
CAAAACTTTAGCCGTCAGCAAAAAATTAAAACAGTCGATGGTATTCAAGCCAAGCAAGATATTTCGGCCGCCTATCTTGA
AAAGTTCCGTCAGAAAGTGGAATTTTATGGCAACCGTTACTATCCAGAAGCTGCTAAACAGCAGCGGCTGGCGGGTGAAG
TACGTTTAATGGTGATTCTAAATGCATCAGGAGGCATCCGCGCCATTCGCCTGATTGATAGTTCAGGCCATGAGATGCTC
GATGAGGCTGCAAAAGCCTCGGTGCGTAAGGCTGCACCATTCGGTGGATTTGATGCCAAAATGAAGGATATTTCTGAGTT
ACGCATTGTGCGTACATGGCGTTTTGATCCAGCAGAGGCAGAGTTTGAAGTGCACTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

74.643

98.246

0.733