Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RW107_RS21005 Genome accession   NZ_CP136257
Coordinates   4070822..4071511 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain A9     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4065822..4076511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW107_RS20985 (RW107_20985) yxeA 4066727..4067074 (-) 348 WP_021481023.1 YxeA family protein -
  RW107_RS20990 (RW107_20990) yxdM 4067088..4068956 (-) 1869 WP_128442014.1 ABC transporter permease YxdM -
  RW107_RS20995 (RW107_20995) yxdL 4068931..4069704 (-) 774 WP_003243557.1 ABC transporter ATP-binding protein YxdL -
  RW107_RS21000 (RW107_21000) yxdK 4069848..4070825 (-) 978 WP_024572300.1 two-component system sensor histidine kinase YxdK -
  RW107_RS21005 (RW107_21005) braR 4070822..4071511 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  RW107_RS21010 (RW107_21010) iolJ 4071619..4072491 (-) 873 WP_014478478.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  RW107_RS21015 (RW107_21015) iolI 4072512..4073348 (-) 837 WP_128442016.1 2-keto-myo-inositol isomerase -
  RW107_RS21020 (RW107_21020) iolH 4073434..4074303 (-) 870 WP_128442017.1 sugar phosphate isomerase/epimerase family protein -
  RW107_RS21025 (RW107_21025) iolG 4074325..4075359 (-) 1035 WP_128442019.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=814097 RW107_RS21005 WP_003243527.1 4070822..4071511(-) (braR) [Bacillus subtilis strain A9]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=814097 RW107_RS21005 WP_003243527.1 4070822..4071511(-) (braR) [Bacillus subtilis strain A9]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406