Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   RW107_RS16800 Genome accession   NZ_CP136257
Coordinates   3228959..3229822 (-) Length   287 a.a.
NCBI ID   WP_043858576.1    Uniprot ID   A8D459
Organism   Bacillus subtilis strain A9     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3223959..3234822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW107_RS16765 (RW107_16765) mrpE 3224127..3224603 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  RW107_RS16770 (RW107_16770) mrpF 3224603..3224887 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  RW107_RS16775 (RW107_16775) mnhG 3224871..3225245 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  RW107_RS16780 (RW107_16780) yuxO 3225284..3225664 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  RW107_RS16785 (RW107_16785) comA 3225683..3226327 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  RW107_RS16790 (RW107_16790) - 3226408..3228720 (-) 2313 Protein_3251 histidine kinase -
  RW107_RS16795 (RW107_16795) comX 3228736..3228957 (-) 222 WP_014480704.1 competence pheromone ComX -
  RW107_RS16800 (RW107_16800) comQ 3228959..3229822 (-) 864 WP_043858576.1 polyprenyl synthetase family protein Regulator
  RW107_RS16805 (RW107_16805) degQ 3230007..3230147 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  RW107_RS16810 (RW107_16810) - 3230369..3230431 (+) 63 Protein_3255 hypothetical protein -
  RW107_RS16815 (RW107_16815) - 3230610..3230978 (+) 369 WP_041850584.1 hypothetical protein -
  RW107_RS16820 (RW107_16820) pdeH 3230954..3232183 (-) 1230 WP_003243525.1 cyclic di-GMP phosphodiesterase -
  RW107_RS16825 (RW107_16825) pncB 3232320..3233792 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  RW107_RS16830 (RW107_16830) pncA 3233808..3234359 (-) 552 WP_038828671.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32760.38 Da        Isoelectric Point: 4.9534

>NTDB_id=814074 RW107_RS16800 WP_043858576.1 3228959..3229822(-) (comQ) [Bacillus subtilis strain A9]
MKEIVDENILNEDLKVKLISFIEEKKQFSFAELAYYHYIAFDGKNDKAIELLASGIELLILSADIFDDIEDKDNLQASWM
KLDPSIATNAATALYTLSLQVIGSVSNHPKLLSLTLQYSLQSLQGQHVDLNLTASSESEYIEMIKLKSGSLVTLPSILGV
YLATGECNETVEEYSRYLGVVEQIANDHYGLYYPNNNDFKTRHTLAFNYLKNKFNQSSIDLLNFYAQENHMINNLEDLKG
KLRESGVIQYLNVIKNLAVENFKESFKKLRLDEQRKNKLLIQLLRGI

Nucleotide


Download         Length: 864 bp        

>NTDB_id=814074 RW107_RS16800 WP_043858576.1 3228959..3229822(-) (comQ) [Bacillus subtilis strain A9]
ATGAAGGAGATTGTGGATGAAAATATTTTAAATGAGGACTTAAAAGTGAAGCTCATTTCTTTTATCGAAGAAAAAAAACA
ATTTTCATTTGCAGAACTGGCTTATTACCATTACATAGCATTTGATGGAAAAAACGACAAAGCAATTGAGTTATTGGCGT
CAGGTATAGAACTTTTAATTTTATCTGCGGACATTTTTGACGATATTGAGGATAAGGACAATCTTCAGGCTTCTTGGATG
AAATTAGATCCTTCTATAGCAACTAACGCAGCTACCGCACTTTATACATTAAGTCTGCAGGTAATAGGTTCAGTCTCAAA
TCATCCAAAACTTTTAAGCCTTACTTTGCAATATTCACTCCAATCTTTACAAGGACAACATGTAGATTTGAATTTAACAG
CCTCATCAGAATCAGAGTATATTGAAATGATTAAACTTAAGTCGGGTTCTCTGGTAACATTGCCCAGTATTCTTGGTGTA
TATCTGGCAACTGGAGAATGTAATGAAACAGTTGAGGAGTATTCACGTTATTTAGGTGTAGTCGAGCAAATTGCAAATGA
TCACTATGGACTTTATTACCCTAACAATAATGACTTCAAAACTAGACATACGCTTGCCTTCAATTATCTTAAAAATAAAT
TTAACCAATCATCAATTGACTTATTAAATTTTTATGCGCAAGAAAATCATATGATAAATAATTTGGAAGATTTGAAGGGA
AAGTTAAGAGAATCAGGTGTAATACAATATTTGAATGTTATAAAAAATTTAGCAGTGGAAAATTTTAAGGAATCATTCAA
AAAACTGAGATTAGATGAACAAAGAAAAAATAAATTACTTATTCAATTATTAAGGGGGATTTAA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(46-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8D459

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

44.286

97.561

0.432