Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QAY87_RS07270 Genome accession   NZ_CP121766
Coordinates   1526459..1527094 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain 22112     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1521459..1532094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY87_RS07255 (QAY87_07255) - 1522177..1523421 (+) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -
  QAY87_RS07260 (QAY87_07260) - 1523497..1524030 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  QAY87_RS07265 (QAY87_07265) comA 1524161..1526386 (+) 2226 WP_058201285.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QAY87_RS07270 (QAY87_07270) exbB 1526459..1527094 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QAY87_RS07275 (QAY87_07275) - 1527091..1527531 (+) 441 WP_023125617.1 biopolymer transporter ExbD -
  QAY87_RS07280 (QAY87_07280) lpxK 1527531..1528529 (+) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  QAY87_RS07285 (QAY87_07285) - 1528567..1528752 (+) 186 WP_003091157.1 Trm112 family protein -
  QAY87_RS07290 (QAY87_07290) kdsB 1528752..1529516 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QAY87_RS07295 (QAY87_07295) - 1529516..1529980 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  QAY87_RS07300 (QAY87_07300) murB 1529977..1531002 (+) 1026 WP_023434479.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=814039 QAY87_RS07270 WP_003091163.1 1526459..1527094(+) (exbB) [Pseudomonas aeruginosa strain 22112]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=814039 QAY87_RS07270 WP_003091163.1 1526459..1527094(+) (exbB) [Pseudomonas aeruginosa strain 22112]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCACCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81