Detailed information NTG0813997

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: QBE03_RS06685
• Genome accession: NZ_CP121698
• Coordinates: 1510840..1512225 (+)
• Length: 461 a.a.
• NCBI ID: WP_017907382.1
• Uniprot ID: -
• Organism: Xanthomonas sacchari strain DJ16
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1505840..1517225

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QBE03_RS06665	-	1506280..1507098 (-)	819	WP_279363011.1	sigma-70 family RNA polymerase sigma factor	-
QBE03_RS06670	-	1507154..1507756 (+)	603	WP_017907385.1	ATP-dependent Clp protease proteolytic subunit	-
QBE03_RS06675	-	1507912..1509780 (+)	1869	WP_148829245.1	tetratricopeptide repeat protein	-
QBE03_RS06680	-	1509998..1510534 (+)	537	WP_026143275.1	adenylate kinase	-
QBE03_RS06685	radA	1510840..1512225 (+)	1386	WP_017907382.1	DNA repair protein RadA	Machinery gene
QBE03_RS06690	-	1512523..1513827 (-)	1305	WP_279363015.1	jacalin-like lectin	-
QBE03_RS06695	-	1513937..1515238 (-)	1302	WP_279363017.1	histidine-type phosphatase	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 48445.68 Da
• Isoelectric Point: 7.4579

>NTDB_id=813997 QBE03_RS06685 WP_017907382.1 1510840..1512225(+) (radA) [Xanthomonas sacchari strain DJ16]
MAKAKTAYVCGECGAEYNKWQGQCTECGAWNTLSEIVLESAATAKAPAAARRSGWAGKAETPKITALKDVEHRDQARVST
GIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALAKMAGTLPVLYVTGEESLGQVAGRAVRLDLPLDGLNALAETGI
EHILQHASAARPKLIVADSVQTLWTEALTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDA
VLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGGSAHQPGSCVMVTREGTRPLMVEVQALVD
ASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLAEKTIAFGE
VGLSGEIRPVPNGEDRLREAATHGFKRAIVPKANAPKTGTVKGMEVIAVERLAQALEAASE

Nucleotide

• Length: 1386 bp

>NTDB_id=813997 QBE03_RS06685 WP_017907382.1 1510840..1512225(+) (radA) [Xanthomonas sacchari strain DJ16]
ATGGCGAAAGCGAAAACGGCCTATGTCTGCGGCGAGTGCGGCGCCGAATACAACAAGTGGCAGGGCCAGTGCACCGAATG
CGGCGCCTGGAACACGCTGAGCGAGATCGTGCTGGAGAGCGCGGCCACGGCCAAGGCGCCGGCCGCGGCGCGGCGCAGCG
GCTGGGCCGGCAAGGCCGAGACGCCGAAGATCACCGCGCTCAAGGACGTGGAGCACCGCGACCAGGCGCGCGTGTCCACC
GGCATCGGCGAGTTCGACCGGGTGCTCGGCGGCGGCCTGGTCGAGGGCGCGGTGGTGCTGATCGGCGGCGACCCCGGCAT
CGGCAAATCGACCCTGCTGCTGCAGGCGCTGGCGAAGATGGCCGGCACGCTGCCGGTGCTGTACGTGACCGGCGAGGAAT
CGCTGGGCCAGGTCGCCGGCCGCGCGGTGCGCCTGGACCTGCCGCTGGACGGCCTCAACGCGCTGGCCGAGACCGGCATC
GAGCACATCCTGCAGCACGCCAGCGCGGCGCGGCCCAAGCTGATCGTCGCCGACTCGGTGCAGACCCTGTGGACCGAGGC
GCTGACCGCCGCGCCGGGTTCGGTCAGCCAGGTGCGCGAGAGCGCGGCGCGCCTGGTGCGCTACGCCAAGGAGACAGGCA
CGGCGGTGTTCCTGGTCGGCCACGTCACCAAGGAGGGCGGCATCGCCGGCCCGCGCGTGCTCGAGCACATGGTCGATGCG
GTGCTGTACTTCGAGGGCGAGAGCGGCAGCCGCTTCCGCCTGCTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGA
ACTGGGCGTGTTCGCGATGGGCGAGAAGGGGCTGAAGGAAGTCTCCAACCCGTCGGCGATCTTCCTGTCCGGCGGCAGCG
CGCACCAGCCCGGCAGTTGCGTGATGGTCACCCGTGAGGGTACGCGGCCGCTGATGGTGGAAGTGCAAGCGCTGGTCGAT
GCCTCGCCGCTGTCCAATCCGCGGCGCGTGGCGGTGGGCCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCCGTGCTGCA
TCGCCATGGCGGCATCGTGGTCGGCGACCAGGACGTGTTCGTCAACGTGGTCGGCGGCATCCGCGTGCAGGAGACCGCGG
CCGACCTGCCGGTGCTGCTGGCGGTGCTGTCGTCGCTGCGCGATCGGCCGTTGGCGGAAAAGACCATCGCCTTCGGCGAG
GTCGGCCTGTCCGGCGAGATCCGCCCGGTGCCCAATGGCGAGGACCGGCTGCGCGAGGCCGCCACGCACGGCTTCAAGCG
CGCCATCGTGCCCAAGGCCAATGCGCCCAAGACCGGTACGGTCAAGGGCATGGAGGTGATCGCGGTGGAGCGCCTGGCGC
AGGCGCTGGAAGCGGCGAGCGAATAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (350-434)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (88-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.024	100	0.49
radA	Streptococcus mitis SK321	43.355	99.566	0.432
radA	Streptococcus pneumoniae Rx1	42.888	99.132	0.425
radA	Streptococcus pneumoniae R6	42.888	99.132	0.425
radA	Streptococcus pneumoniae TIGR4	42.888	99.132	0.425
radA	Streptococcus pneumoniae D39	42.888	99.132	0.425
radA	Streptococcus mitis NCTC 12261	42.888	99.132	0.425