Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   RW107_RS03645 Genome accession   NZ_CP136257
Coordinates   717141..718271 (+) Length   376 a.a.
NCBI ID   WP_128441419.1    Uniprot ID   -
Organism   Bacillus subtilis strain A9     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 712141..723271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW107_RS03630 (RW107_03630) atxF 713279..713734 (-) 456 WP_072173434.1 TIGR01741 family protein -
  RW107_RS03635 (RW107_03635) yeeF 713754..715763 (-) 2010 WP_041851218.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  RW107_RS03640 (RW107_03640) - 715976..716998 (+) 1023 WP_072173411.1 hypothetical protein -
  RW107_RS03645 (RW107_03645) rapC 717141..718271 (+) 1131 WP_128441419.1 response regulator aspartate phosphatase RapH Regulator
  RW107_RS03650 (RW107_03650) phrH 718261..718434 (+) 174 WP_069837348.1 phosphatase RapH inhibitor PhrH -
  RW107_RS03655 (RW107_03655) yeeI 718594..719313 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  RW107_RS03660 (RW107_03660) - 719447..719875 (+) 429 WP_128441421.1 spore coat protein -
  RW107_RS03665 (RW107_03665) yezE 719990..720574 (+) 585 WP_128441423.1 TetR/AcrR family transcriptional regulator -
  RW107_RS03670 (RW107_03670) yesE 720654..721097 (+) 444 WP_015715468.1 nuclear transport factor 2 family protein -
  RW107_RS03675 (RW107_03675) yesF 721094..721962 (+) 869 Protein_674 NAD-dependent epimerase/dehydratase family protein -
  RW107_RS03680 (RW107_03680) cotJA 722089..722337 (+) 249 WP_088467559.1 spore coat-associated protein CotJA -
  RW107_RS03685 (RW107_03685) cotJB 722321..722584 (+) 264 WP_003219491.1 spore coat protein CotJB -
  RW107_RS03690 (RW107_03690) cotJC 722599..723168 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43917.14 Da        Isoelectric Point: 5.7144

>NTDB_id=813979 RW107_RS03645 WP_128441419.1 717141..718271(+) (rapC) [Bacillus subtilis strain A9]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPVVSDDIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALDLAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACSRSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=813979 RW107_RS03645 WP_128441419.1 717141..718271(+) (rapC) [Bacillus subtilis strain A9]
TTGAGTCAAGCCATACCGTCTTCGCGTGTTGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGCAGATGGAAGAAGACCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGTCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGGTTGTGTCAG
ATGATATTGAGAAAGCCGAATTCCATTTTAAAGTGGCAGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTGGACATTTATCAAAACCATCCTCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTAGATTTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTCCCTGATCTGCTTCCGAAAGTCTTGTTTGGGTTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGCAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCGTACATTGAAGCATGTTCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.426

100

0.404
  rapF Bacillus subtilis subsp. subtilis str. 168

39.523

100

0.396