Detailed information    

insolico Bioinformatically predicted

Overview


Name   uvrA   Type   Machinery gene
Locus tag   RWA07_RS18155 Genome accession   NZ_CP136183
Coordinates   3738456..3741290 (+) Length   944 a.a.
NCBI ID   WP_004833579.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 3733456..3746290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWA07_RS18125 (RWA07_18125) - 3733694..3734776 (-) 1083 WP_025467264.1 DUF475 domain-containing protein -
  RWA07_RS18130 (RWA07_18130) tenA 3735039..3735713 (+) 675 WP_004833584.1 thiaminase II -
  RWA07_RS18135 (RWA07_18135) - 3735763..3736104 (-) 342 WP_000263329.1 GlpM family protein -
  RWA07_RS18140 (RWA07_18140) - 3736157..3736510 (-) 354 WP_000580165.1 DUF1304 domain-containing protein -
  RWA07_RS18145 (RWA07_18145) - 3736576..3737553 (-) 978 WP_004833582.1 zinc-binding dehydrogenase -
  RWA07_RS18150 (RWA07_18150) - 3737557..3738159 (-) 603 WP_000826320.1 TetR/AcrR family transcriptional regulator -
  RWA07_RS18155 (RWA07_18155) uvrA 3738456..3741290 (+) 2835 WP_004833579.1 excinuclease ABC subunit UvrA Machinery gene
  RWA07_RS18160 (RWA07_18160) - 3741324..3743030 (-) 1707 WP_004833577.1 GGDEF domain-containing protein -
  RWA07_RS18165 (RWA07_18165) omp33-36 3744023..3744922 (+) 900 WP_000733005.1 porin Omp33-36 -

Sequence


Protein


Download         Length: 944 a.a.        Molecular weight: 104444.73 Da        Isoelectric Point: 6.4549

>NTDB_id=813951 RWA07_RS18155 WP_004833579.1 3738456..3741290(+) (uvrA) [Acinetobacter baumannii strain ABO21-A001]
MSQSHIRIRGARTHNLKNVSLDIPRDKFVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSQMEKPEVDSIEG
LSPAIAIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPYCPEHDLPMVAQTVSEMVDAVKNLEEGTALMLLAPVVRER
KGEYSNLFEQLQGQGFVRARVDGEIIDIDTPPELDKKKKHTIEVVVDRFKVRDDLGNRIAESFETALRLGGDIAVLSWMN
DEHPDRVFSAKHSCPECDRAVAELEPRLFSFNNPFGACPVCDGLGTRSHFSPEKLIPNPELAISEGAIRGWDRQRPYYYS
MLQKVADHFGFQLDTPWNQLDKDTQKKFLQGTGKEKIDLSYIDERGRKHTRVQPFEGILPHLERRYRETESNYVRDDLAQ
YLSNAACDACGGSRLNEISRHVRVKDKTIADITRMSIGDAESYYQGINLEGAKGEIADKIFKEIRERLHFLVSVGLNYLS
LARSAETLSGGEAQRIRLASQIGAGLMGVMYVLDEPSIGLHQRDNDRLLQTLIRLRDLGNTVLVVEHDEDAIRAADHIID
IGPGAGVHGGVVIAEGTYDELAKHADSLTGQYLSGKLKIEVPKQRTQPPKPEEKIKLSGAAGHNLKNVDLTIPLGIMTCV
TGVSGSGKSTLINRTLLPLAATQLNGATTLTAEKFDSIDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAQT
PEAKARGYSAGRFSFNVKGGRCEACEGDGMIKVAMHFLPDMYVPCDACHGKRYNRETLEVGYKGKNISDVLEMTVEDAAE
FFSAIPVIHRRLETLTQVGLGYIRLGQAATTLSGGEAQRVKLARELAKRDTGKTLYILDEPTTGLHFHDIAKLLDILHEL
RNKGNTIVVIEHNLDVIKTADWVVDLGPEGGSGGGMIIAEGTPEQVAEVEISHTGRFLKPMLKQ

Nucleotide


Download         Length: 2835 bp        

>NTDB_id=813951 RWA07_RS18155 WP_004833579.1 3738456..3741290(+) (uvrA) [Acinetobacter baumannii strain ABO21-A001]
ATGAGCCAAAGTCATATCCGTATTCGAGGCGCACGCACCCATAACTTAAAAAATGTGTCACTCGATATTCCACGCGACAA
ATTTGTGGTAATTACGGGGCTATCAGGTTCAGGAAAATCTTCTCTTGCCTTTGATACCTTGTATGCCGAAGGACAGCGCC
GTTACGTCGAATCACTTTCGGCCTATGCCCGTCAGTTTTTATCGCAAATGGAAAAACCTGAAGTTGACTCGATTGAAGGT
TTATCACCAGCCATTGCGATTGAGCAAAAGTCTACTAGCCATAACCCACGTTCAACGGTTGGTACGATTACCGAAATTTA
TGACTATTTGCGTCTGCTTTATGCACGTGTCGGTACGCCTTATTGCCCTGAACACGACTTACCTATGGTTGCGCAAACTG
TTTCTGAAATGGTCGATGCGGTAAAAAACCTTGAGGAAGGTACAGCACTTATGTTGCTTGCCCCTGTTGTTCGTGAGCGT
AAAGGTGAATACAGCAACTTGTTCGAACAACTACAAGGTCAAGGTTTCGTTCGTGCCCGTGTTGATGGTGAAATCATTGA
TATTGATACACCACCGGAACTCGACAAAAAGAAAAAACATACCATTGAGGTAGTTGTTGACCGCTTTAAAGTACGTGATG
ATTTAGGCAACCGTATTGCTGAATCATTTGAAACTGCACTGCGTTTAGGTGGTGATATTGCAGTTTTATCGTGGATGAAT
GACGAACATCCAGATCGCGTTTTTTCTGCAAAACACTCATGCCCTGAATGTGATCGCGCAGTCGCAGAGCTTGAGCCACG
TTTATTTTCATTTAACAACCCGTTTGGTGCGTGCCCTGTCTGTGATGGCTTAGGTACACGTAGCCATTTTAGCCCTGAAA
AACTCATTCCTAACCCTGAGCTTGCAATTAGTGAAGGTGCTATTCGTGGTTGGGATCGTCAACGTCCTTATTACTATTCA
ATGCTGCAAAAAGTTGCCGACCATTTCGGTTTTCAACTTGATACACCTTGGAATCAGTTAGATAAAGACACGCAAAAGAA
ATTCTTACAAGGTACTGGCAAAGAAAAAATCGATTTAAGTTATATCGATGAACGCGGCCGTAAACATACACGCGTGCAAC
CTTTTGAAGGAATTTTGCCACACCTTGAACGTCGCTATCGTGAAACTGAAAGTAACTATGTACGTGATGATTTAGCACAA
TATTTGTCTAATGCAGCTTGTGATGCATGTGGTGGGTCACGTCTCAATGAAATTTCACGTCATGTTCGTGTAAAAGACAA
AACGATTGCCGACATTACTCGCATGTCGATTGGAGATGCCGAAAGTTACTATCAAGGTATAAACCTTGAAGGTGCCAAAG
GTGAAATTGCAGATAAAATCTTTAAAGAGATTCGTGAGCGTTTACATTTCTTGGTGAGTGTTGGCCTGAACTATTTAAGT
CTGGCTCGTTCTGCCGAAACGCTATCGGGTGGTGAAGCCCAGCGTATCCGTCTAGCTTCGCAAATTGGTGCAGGTTTGAT
GGGTGTTATGTATGTACTCGATGAACCATCAATTGGTCTCCATCAACGTGATAATGACCGTTTATTACAAACGCTAATTC
GCTTACGTGACTTAGGTAATACGGTATTAGTCGTTGAACATGATGAAGATGCAATCCGTGCAGCTGACCATATTATTGAT
ATCGGCCCTGGTGCTGGCGTGCATGGTGGTGTTGTTATTGCTGAAGGTACGTATGATGAGCTGGCTAAACATGCCGACTC
GCTCACAGGTCAATATCTTTCAGGCAAACTCAAAATTGAAGTGCCAAAACAGCGAACTCAACCACCTAAACCTGAAGAAA
AAATTAAACTTTCAGGTGCAGCGGGTCATAACTTAAAAAATGTCGATTTAACCATCCCACTTGGCATTATGACTTGTGTC
ACGGGTGTTTCAGGTTCAGGTAAATCAACACTGATTAACCGTACGTTACTCCCACTGGCTGCAACACAGCTCAACGGTGC
AACGACCTTAACAGCTGAAAAGTTCGACTCGATTGATGGTCTACAACATCTGGACAAAGTCGTTGATATTGATCAAAGTC
CAATTGGACGTACTCCACGTTCTAACCCTGCAACGTATACAGGGTTATTTACGCCAATTCGTGAGTTATTTGCTCAAACA
CCAGAAGCGAAAGCTCGTGGTTATAGTGCGGGTCGCTTCTCGTTTAACGTAAAAGGCGGACGCTGCGAAGCGTGTGAAGG
CGACGGTATGATTAAAGTCGCAATGCACTTCTTACCAGACATGTATGTACCTTGCGATGCTTGTCATGGTAAGCGCTATA
ATCGTGAAACACTTGAAGTCGGTTATAAAGGCAAAAACATTTCTGACGTTTTAGAAATGACGGTTGAAGATGCTGCTGAG
TTCTTTAGTGCTATTCCAGTTATTCACCGTCGTTTAGAAACCTTAACTCAGGTAGGTCTAGGCTATATTCGTTTAGGTCA
GGCGGCTACTACTTTATCTGGTGGTGAAGCTCAGCGTGTCAAACTGGCTCGTGAGTTAGCGAAACGTGATACGGGTAAAA
CGCTTTATATCTTGGATGAACCAACAACAGGTCTGCATTTCCATGATATTGCCAAGTTACTCGATATTTTGCATGAGCTA
CGCAACAAGGGTAATACCATAGTGGTAATTGAACATAACCTTGATGTCATTAAAACAGCAGACTGGGTTGTCGACTTAGG
TCCAGAAGGTGGTTCGGGCGGTGGTATGATCATTGCCGAAGGTACACCTGAACAAGTAGCCGAGGTCGAGATTTCCCATA
CTGGCCGCTTCTTGAAACCGATGTTGAAACAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.356

100

0.564

  uvrA Streptococcus pneumoniae TIGR4

56.356

100

0.564

  uvrA Streptococcus pneumoniae D39

56.356

100

0.564