Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RWA07_RS08665 Genome accession   NZ_CP136183
Coordinates   1797355..1797990 (+) Length   211 a.a.
NCBI ID   WP_000264035.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A001     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1792355..1802990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWA07_RS08640 (RWA07_08640) - 1793195..1794208 (+) 1014 WP_001096097.1 aminoglycoside phosphotransferase family protein -
  RWA07_RS08645 (RWA07_08645) murU 1794208..1794897 (+) 690 WP_000646460.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  RWA07_RS08650 (RWA07_08650) rsmG 1794985..1795617 (+) 633 WP_000553196.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  RWA07_RS08655 (RWA07_08655) - 1795639..1796421 (+) 783 WP_000057212.1 ParA family protein -
  RWA07_RS08660 (RWA07_08660) - 1796418..1797305 (+) 888 WP_000023430.1 ParB/RepB/Spo0J family partition protein -
  RWA07_RS08665 (RWA07_08665) exbB 1797355..1797990 (+) 636 WP_000264035.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RWA07_RS08670 (RWA07_08670) - 1798006..1798434 (+) 429 WP_000669682.1 ExbD/TolR family protein -
  RWA07_RS08675 (RWA07_08675) msbA 1798431..1800158 (+) 1728 WP_001070739.1 lipid A export permease/ATP-binding protein MsbA -
  RWA07_RS08680 (RWA07_08680) lpxK 1800161..1801171 (+) 1011 WP_000050450.1 tetraacyldisaccharide 4'-kinase -
  RWA07_RS08685 (RWA07_08685) kdsB 1801181..1801942 (+) 762 WP_125268213.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RWA07_RS08690 (RWA07_08690) - 1801954..1802934 (+) 981 WP_016654157.1 DNA polymerase III, delta' subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23211.10 Da        Isoelectric Point: 6.4861

>NTDB_id=813908 RWA07_RS08665 WP_000264035.1 1797355..1797990(+) (exbB) [Acinetobacter baumannii strain ABO21-A001]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=813908 RWA07_RS08665 WP_000264035.1 1797355..1797990(+) (exbB) [Acinetobacter baumannii strain ABO21-A001]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCTATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCCATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393