Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   RWA07_RS01435 Genome accession   NZ_CP136183
Coordinates   302541..302867 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   A0A151YUA4
Organism   Acinetobacter baumannii strain ABO21-A001     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 297541..307867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWA07_RS01410 (RWA07_01410) - 298032..298799 (+) 768 WP_000897417.1 uroporphyrinogen-III synthase -
  RWA07_RS01415 (RWA07_01415) - 298808..299647 (+) 840 WP_001230207.1 hypothetical protein -
  RWA07_RS01420 (RWA07_01420) - 299657..300850 (+) 1194 WP_000681777.1 hypothetical protein -
  RWA07_RS01425 (RWA07_01425) - 300858..301298 (+) 441 WP_000661569.1 acyl-CoA thioesterase -
  RWA07_RS01430 (RWA07_01430) - 301396..302328 (-) 933 WP_001040033.1 IS5 family transposase -
  RWA07_RS01435 (RWA07_01435) hns 302541..302867 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  RWA07_RS01440 (RWA07_01440) gspN 303199..303942 (+) 744 WP_000730343.1 type II secretion system protein N -
  RWA07_RS01445 (RWA07_01445) - 303942..304778 (+) 837 WP_000870031.1 type II secretion system protein N -
  RWA07_RS01450 (RWA07_01450) gspD 304820..307096 (+) 2277 WP_001196426.1 type II secretion system secretin GspD -
  RWA07_RS01455 (RWA07_01455) - 307137..307766 (+) 630 WP_002058846.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=813882 RWA07_RS01435 WP_000801427.1 302541..302867(+) (hns) [Acinetobacter baumannii strain ABO21-A001]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=813882 RWA07_RS01435 WP_000801427.1 302541..302867(+) (hns) [Acinetobacter baumannii strain ABO21-A001]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCATATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterProScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A151YUA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1