Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   P9989_RS07385 Genome accession   NZ_CP121671
Coordinates   1417091..1418899 (+) Length   602 a.a.
NCBI ID   WP_283078131.1    Uniprot ID   -
Organism   Halobacillus naozhouensis strain KCTC 13234     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1412091..1423899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9989_RS07360 (P9989_07355) - 1412711..1413289 (+) 579 WP_079529417.1 GNAT family N-acetyltransferase -
  P9989_RS07365 (P9989_07360) spxA 1413610..1414005 (+) 396 WP_079529418.1 transcriptional regulator SpxA -
  P9989_RS07370 (P9989_07365) - 1414125..1414790 (-) 666 WP_283078128.1 TerC family protein -
  P9989_RS07375 (P9989_07370) mecA 1415066..1415770 (+) 705 WP_283078129.1 adaptor protein MecA -
  P9989_RS07380 (P9989_07375) - 1415843..1417024 (+) 1182 WP_283078130.1 competence protein CoiA family protein -
  P9989_RS07385 (P9989_07380) pepF 1417091..1418899 (+) 1809 WP_283078131.1 oligoendopeptidase F Regulator
  P9989_RS07390 (P9989_07385) - 1419437..1420324 (-) 888 WP_283078132.1 ClpXP adapter SpxH family protein -
  P9989_RS07395 (P9989_07390) - 1420321..1420722 (-) 402 WP_283078133.1 globin -
  P9989_RS07400 (P9989_07395) - 1420778..1421359 (-) 582 WP_283078134.1 CYTH domain-containing protein -
  P9989_RS07405 (P9989_07400) - 1421526..1422164 (+) 639 WP_283078135.1 GTP pyrophosphokinase family protein -
  P9989_RS07410 (P9989_07405) - 1422180..1422989 (+) 810 WP_283078136.1 NAD kinase -
  P9989_RS07415 (P9989_07410) - 1422986..1423864 (+) 879 WP_283078137.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 69608.05 Da        Isoelectric Point: 4.5648

>NTDB_id=813826 P9989_RS07385 WP_283078131.1 1417091..1418899(+) (pepF) [Halobacillus naozhouensis strain KCTC 13234]
MASTTKQLPKREEIPEELTWNLETIFASDEEWYKEFEEIKKLIPEVQAYKDTLGDSADQLYQLLTLQDKVSNRIGKLFTY
AHMRSDQDTTNSHYQEMNAKAESLLTQVSSSMSFIVPEILSLSEEMVMKYLKEHEELQQYEHTLHEILRRKEHVLSEEEE
KLLSGFSEIASNPSQTYGSLSNADLTFPTIKDEDGNEVDLTQGRFVGFLKSEDREVRKNAFKEMYDTYGSFKNTFASTLS
GQVKKDNFFAETKKYESAREAALDGNKIPESVYDNLIEAVEERLPLMHRYVALRKKVLELDELHMYDLYTPLVKDAEMEV
SYEEAQQVVLNALEPLGKDYVDVVREGLTNRWIDVEENKGKRSGAYSSGHYGTNPFILMNWQDDVNNLFTLAHELGHSLH
SYYTHNNQPYRYGNYSIFVAEVASTCNEALLNDHLTKKTDDKKEKLYLLNNFLEGFRGTVFRQTMFAEFEHEIHIQAQKG
EALTADKLTQLYYDLNKKYFGNDLVIDEEIGLEWARIPHFYMGYYVYQYSTGYAAATTLAEQILTEGEPAVERYMSFLRA
GSSDYPIEVLKKAGVDMTSKEPILKALDVFEQKLDEMEALLQ

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=813826 P9989_RS07385 WP_283078131.1 1417091..1418899(+) (pepF) [Halobacillus naozhouensis strain KCTC 13234]
ATGGCATCGACAACGAAACAGTTACCAAAAAGGGAAGAGATCCCTGAGGAGTTAACATGGAATCTTGAGACGATTTTTGC
TAGTGATGAAGAATGGTACAAGGAATTTGAAGAAATTAAGAAGCTGATTCCAGAGGTACAGGCTTATAAAGACACGCTGG
GTGATTCTGCCGACCAATTGTACCAATTGTTAACACTGCAGGATAAGGTATCAAACAGAATTGGGAAATTATTCACATAT
GCGCATATGCGCAGTGATCAGGATACGACCAATTCTCACTATCAGGAGATGAATGCGAAAGCGGAAAGCCTGTTGACACA
GGTTTCTTCCTCTATGAGTTTTATCGTTCCAGAAATTTTGTCCTTGTCTGAAGAAATGGTAATGAAATATTTGAAGGAGC
ATGAGGAATTACAGCAGTATGAACATACGCTCCATGAAATTTTGAGAAGAAAAGAGCATGTACTTAGTGAAGAAGAAGAG
AAGCTGCTGTCAGGATTCTCTGAGATCGCTTCTAATCCTTCCCAGACGTATGGGTCTCTAAGTAACGCTGATTTAACATT
CCCGACGATTAAGGATGAGGACGGGAATGAAGTTGATTTGACTCAAGGCCGCTTTGTAGGTTTCTTGAAATCAGAGGATC
GTGAAGTAAGAAAGAATGCGTTCAAGGAGATGTATGACACGTATGGTTCTTTTAAGAACACCTTTGCTTCTACGCTAAGC
GGGCAAGTGAAAAAGGATAACTTCTTTGCGGAAACGAAAAAATATGAGAGTGCACGGGAAGCGGCCCTGGATGGAAACAA
AATCCCTGAATCTGTGTATGATAATTTAATTGAGGCAGTGGAAGAGCGGCTTCCGCTCATGCATCGTTATGTAGCTCTGC
GTAAGAAAGTACTTGAACTAGATGAGTTGCATATGTACGACTTGTACACACCGCTTGTGAAAGATGCTGAGATGGAAGTC
TCCTATGAGGAAGCACAGCAGGTTGTCCTAAACGCTCTTGAGCCATTAGGAAAAGATTATGTGGACGTAGTGAGAGAAGG
ACTGACCAACCGCTGGATTGATGTTGAAGAGAATAAAGGCAAGCGGAGCGGCGCCTATTCTTCTGGCCATTATGGAACGA
ACCCGTTTATTTTAATGAACTGGCAGGATGACGTCAATAATCTTTTCACGCTGGCCCATGAACTGGGACATTCGCTGCAC
AGTTATTACACTCATAACAATCAGCCGTATCGCTATGGAAATTATTCTATTTTTGTGGCGGAAGTGGCTTCAACGTGTAA
TGAGGCACTGTTGAACGATCACCTTACGAAGAAGACGGATGATAAGAAAGAGAAACTTTACTTATTGAACAACTTCCTGG
AAGGATTCAGAGGTACGGTTTTCCGGCAGACGATGTTTGCTGAATTCGAACATGAAATTCATATTCAAGCACAAAAAGGC
GAGGCTTTAACAGCCGATAAACTGACACAGCTGTACTACGACTTGAATAAAAAGTACTTCGGAAACGATCTCGTTATCGA
TGAAGAGATCGGGCTAGAGTGGGCAAGAATTCCTCACTTCTATATGGGATACTATGTATATCAATATTCAACAGGATATG
CAGCAGCCACTACCCTCGCTGAGCAAATTTTGACTGAAGGGGAACCTGCTGTTGAGAGGTACATGAGCTTCTTGAGGGCG
GGGAGCAGTGATTACCCTATTGAAGTGTTGAAGAAAGCTGGGGTAGATATGACCTCGAAAGAGCCTATCTTAAAAGCATT
GGATGTATTTGAGCAAAAGCTTGATGAAATGGAAGCGTTATTGCAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(209-588)

Oligopeptidase F (Peptidase_M3_N)

(118-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.818

98.339

0.48