Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   P9989_RS01410 Genome accession   NZ_CP121671
Coordinates   241099..242052 (+) Length   317 a.a.
NCBI ID   WP_283077063.1    Uniprot ID   -
Organism   Halobacillus naozhouensis strain KCTC 13234     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 236099..247052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9989_RS01380 (P9989_01380) - 236246..237064 (+) 819 WP_283077057.1 riboflavin kinase -
  P9989_RS01385 (P9989_01385) - 237116..237328 (+) 213 WP_283077058.1 DUF1450 domain-containing protein -
  P9989_RS01390 (P9989_01390) - 237733..238557 (+) 825 WP_283077059.1 aldo/keto reductase -
  P9989_RS01395 (P9989_01395) - 238683..239285 (+) 603 WP_283077060.1 biotin transporter BioY -
  P9989_RS01400 (P9989_01400) bioB 239298..240290 (+) 993 WP_283077061.1 biotin synthase BioB -
  P9989_RS01405 (P9989_01405) - 240326..240913 (-) 588 WP_283077062.1 TetR/AcrR family transcriptional regulator -
  P9989_RS01410 (P9989_01410) ceuB 241099..242052 (+) 954 WP_283077063.1 ABC transporter permease Machinery gene
  P9989_RS01415 (P9989_01415) - 242042..242986 (+) 945 WP_283077064.1 iron chelate uptake ABC transporter family permease subunit -
  P9989_RS01420 (P9989_01420) - 242983..243738 (+) 756 WP_283077065.1 ABC transporter ATP-binding protein -
  P9989_RS01425 (P9989_01425) - 243758..244690 (+) 933 WP_283077066.1 siderophore ABC transporter substrate-binding protein -
  P9989_RS01430 (P9989_01430) - 245026..245535 (+) 510 WP_283077067.1 GNAT family N-acetyltransferase -
  P9989_RS01435 (P9989_01435) uvsE 245579..246535 (+) 957 WP_283077068.1 UV DNA damage repair endonuclease UvsE -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35111.16 Da        Isoelectric Point: 9.6580

>NTDB_id=813819 P9989_RS01410 WP_283077063.1 241099..242052(+) (ceuB) [Halobacillus naozhouensis strain KCTC 13234]
MKFRYTLFILIILSFGSLFIGVSDISFMDIFHLSQEQFQILMISRFPRLVSILIAGASISICGLIMQQLTRNKFVSPTTA
GTFDSARLGVLVSLLVFTSASPLVKMLVAFGFALLGTFIFMKILDRIPFKDTIFIPLVGLMFGNVISSIATFFALKHNLV
QNMSSWLHGDFSMIMEGRYELMYISIPFLVIAYLYANQFTIAGVGEDFAKNVGLNYKQVVNIGLAIVAMVTASVVLTVGM
IPFLGLIIPNIVSYYYGDHLKKSIIQTAIIGAAFVLVCDILGRVILYPYEISISLTVGVIGSAIFIYLLMRRRSYAA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=813819 P9989_RS01410 WP_283077063.1 241099..242052(+) (ceuB) [Halobacillus naozhouensis strain KCTC 13234]
ATGAAATTTAGATACACTCTTTTTATTCTTATCATTTTAAGTTTTGGGTCATTGTTTATTGGAGTATCGGATATCTCGTT
TATGGACATTTTCCACTTATCTCAGGAGCAATTTCAAATTCTGATGATCAGCCGTTTTCCAAGGTTAGTAAGCATTCTAA
TTGCCGGAGCTAGTATTAGTATTTGTGGCCTCATTATGCAGCAGCTGACTAGGAATAAATTCGTCTCTCCTACGACAGCT
GGCACCTTTGATTCGGCTCGGCTTGGCGTTTTAGTCTCGTTACTCGTGTTTACTTCGGCAAGCCCCTTAGTGAAAATGCT
TGTAGCATTCGGATTTGCTCTCTTGGGCACGTTCATTTTTATGAAAATCCTAGACCGAATTCCTTTCAAGGATACGATCT
TTATCCCGCTTGTTGGATTGATGTTTGGGAATGTGATCAGTTCGATTGCAACGTTCTTTGCATTGAAACACAACCTTGTT
CAGAACATGTCCTCTTGGTTACACGGTGATTTCTCTATGATTATGGAGGGACGTTATGAGCTAATGTACATATCGATTCC
CTTTCTTGTGATTGCTTATTTATACGCGAATCAATTTACGATCGCAGGTGTAGGGGAGGATTTTGCAAAAAACGTAGGGT
TAAACTATAAACAAGTCGTAAATATAGGGTTAGCAATTGTTGCTATGGTGACAGCGTCAGTTGTCCTTACCGTAGGCATG
ATTCCGTTTTTGGGCTTAATCATTCCTAACATCGTTTCATACTATTACGGGGATCACTTGAAGAAAAGCATTATTCAAAC
TGCGATAATTGGTGCAGCATTCGTCCTTGTCTGTGACATCTTAGGTCGGGTCATCCTTTACCCATATGAAATTTCCATCA
GCCTGACTGTAGGTGTCATCGGGAGCGCAATCTTTATTTACTTACTGATGAGGAGGCGGTCGTATGCAGCTTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.863

100

0.527