Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   P9989_RS00725 Genome accession   NZ_CP121671
Coordinates   127272..128645 (+) Length   457 a.a.
NCBI ID   WP_283076962.1    Uniprot ID   -
Organism   Halobacillus naozhouensis strain KCTC 13234     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 122272..133645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9989_RS00705 (P9989_00705) - 122523..122987 (+) 465 WP_283076958.1 CtsR family transcriptional regulator -
  P9989_RS00710 (P9989_00710) - 123008..123553 (+) 546 WP_283076959.1 UvrB/UvrC motif-containing protein -
  P9989_RS00715 (P9989_00715) - 123553..124623 (+) 1071 WP_283076960.1 protein arginine kinase -
  P9989_RS00720 (P9989_00720) clpC 124643..127099 (+) 2457 WP_283076961.1 ATP-dependent protease ATP-binding subunit ClpC -
  P9989_RS00725 (P9989_00725) radA 127272..128645 (+) 1374 WP_283076962.1 DNA repair protein RadA Machinery gene
  P9989_RS00730 (P9989_00730) disA 128646..129719 (+) 1074 WP_283076963.1 DNA integrity scanning diadenylate cyclase DisA -
  P9989_RS00735 (P9989_00735) - 129880..130986 (+) 1107 WP_283076964.1 PIN/TRAM domain-containing protein -
  P9989_RS00740 (P9989_00740) ispF 131119..132261 (+) 1143 WP_283078802.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50028.57 Da        Isoelectric Point: 7.7288

>NTDB_id=813818 P9989_RS00725 WP_283076962.1 127272..128645(+) (radA) [Halobacillus naozhouensis strain KCTC 13234]
MAKRKTKFVCQECGYETPKWMGKCPGCHQWNTLVEETAITGSSSRHVFQTNTSSSKPEKINAIKSEKEPRMATDMPELNR
VLGGGIVAGSLVLIGGDPGIGKSTLLLQVSAQIANKQLPVLYISGEESSRQTKLRAERLGIQSEELYVLSETNLQDVLNQ
IEAIDPKFVVIDSIQTIFKEDVTSAPGSVSQVRECTSQLMRIAKSKGIPIFIVGHVTKEGSIAGPRLLEHMVDAVLYFEG
ERHHTFRILRGVKNRFGSTHEMGIFEMKEKGLEEVLNPSEIFLEERSQGAAGSIVVASMEGTRPVLVEIQALISPTSYGN
PRRMATGLDNNRVPLLMAVLEKRAGLLLQNQDAYVKVAGGVKLDEPAIDLAVAISIASSFRNRASNADDVVVGEVGLTGE
IRRVARIEQRVQEANKLGFKRVIIPKKNLDGWTPPQPIEVIGVNTVQEAIQVTLGER

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=813818 P9989_RS00725 WP_283076962.1 127272..128645(+) (radA) [Halobacillus naozhouensis strain KCTC 13234]
TTGGCTAAAAGAAAAACAAAGTTTGTTTGTCAAGAATGCGGATATGAAACGCCCAAGTGGATGGGGAAATGTCCTGGCTG
TCATCAGTGGAATACACTGGTCGAGGAGACGGCGATAACGGGTTCCAGTTCCCGCCATGTATTTCAAACCAATACTTCAT
CATCAAAACCTGAGAAGATAAATGCGATCAAGTCTGAAAAGGAACCTCGGATGGCCACCGATATGCCTGAGTTAAACAGG
GTTCTCGGAGGGGGCATTGTGGCAGGATCACTGGTTTTGATAGGGGGAGATCCGGGTATTGGGAAGTCAACATTATTATT
GCAAGTCTCCGCGCAAATTGCGAATAAACAGTTGCCAGTTTTGTATATATCAGGAGAGGAGTCCTCACGCCAAACTAAAC
TGCGTGCAGAACGCCTTGGAATCCAGTCAGAAGAACTTTATGTATTATCTGAGACTAATTTACAGGACGTATTGAATCAA
ATAGAGGCGATTGATCCTAAATTTGTGGTCATCGACTCTATTCAAACAATTTTTAAGGAAGATGTTACCTCAGCACCAGG
AAGTGTTTCGCAAGTCCGTGAATGTACGAGTCAGCTCATGAGGATAGCTAAGAGTAAGGGAATACCTATCTTTATCGTTG
GTCATGTTACGAAAGAAGGCTCAATTGCTGGACCGCGGCTGCTTGAACATATGGTCGATGCCGTCTTGTATTTTGAAGGG
GAAAGACATCATACTTTCCGTATTTTACGGGGTGTTAAGAACCGCTTCGGAAGCACACATGAAATGGGCATATTTGAGAT
GAAAGAGAAGGGCCTAGAAGAGGTGTTGAACCCTTCTGAAATCTTTTTAGAGGAAAGGTCCCAAGGTGCAGCGGGATCGA
TTGTAGTGGCCTCTATGGAAGGAACAAGGCCAGTCTTAGTTGAGATCCAGGCTCTCATATCGCCAACGTCTTACGGCAAT
CCTAGAAGAATGGCAACAGGCCTTGATAATAATCGAGTACCATTATTAATGGCAGTTCTTGAAAAAAGGGCTGGTCTATT
ACTTCAAAATCAGGATGCTTATGTGAAAGTTGCCGGCGGTGTTAAGTTGGATGAACCGGCGATTGATTTAGCCGTGGCCA
TCAGTATTGCCTCAAGCTTTAGGAACCGGGCTTCAAATGCTGATGATGTGGTAGTAGGCGAGGTAGGGCTAACAGGTGAA
ATTAGAAGAGTGGCCCGCATTGAACAACGAGTTCAGGAAGCTAATAAACTTGGTTTTAAACGTGTGATTATTCCTAAGAA
GAACTTAGATGGATGGACACCGCCTCAGCCAATAGAAGTTATCGGGGTAAACACCGTTCAGGAAGCGATTCAGGTCACAT
TGGGGGAGCGGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)

AAA domain (AAA_25)

(70-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.991

100

0.72
  radA Streptococcus mitis NCTC 12261

62.306

98.687

0.615
  radA Streptococcus mitis SK321

62.306

98.687

0.615
  radA Streptococcus pneumoniae Rx1

62.084

98.687

0.613
  radA Streptococcus pneumoniae D39

62.084

98.687

0.613
  radA Streptococcus pneumoniae R6

62.084

98.687

0.613
  radA Streptococcus pneumoniae TIGR4

62.084

98.687

0.613