Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QBE57_RS09545 Genome accession   NZ_CP121670
Coordinates   1944320..1945687 (+) Length   455 a.a.
NCBI ID   WP_171935667.1    Uniprot ID   -
Organism   Streptococcus suis strain HBXY-SL     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1939320..1950687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBE57_RS09525 - 1939733..1941439 (+) 1707 WP_012028548.1 ABC transporter ATP-binding protein -
  QBE57_RS09530 - 1941440..1943224 (+) 1785 WP_012028547.1 ABC transporter ATP-binding protein -
  QBE57_RS09535 - 1943330..1943773 (+) 444 WP_002939955.1 dUTP diphosphatase -
  QBE57_RS09540 - 1943780..1944313 (+) 534 WP_012028546.1 histidine phosphatase family protein -
  QBE57_RS09545 radA 1944320..1945687 (+) 1368 WP_171935667.1 DNA repair protein RadA Machinery gene
  QBE57_RS09550 - 1945811..1946305 (+) 495 WP_012027915.1 beta-class carbonic anhydrase -
  QBE57_RS09555 - 1946513..1947271 (+) 759 WP_002939965.1 TIGR00266 family protein -
  QBE57_RS09560 - 1947449..1947895 (+) 447 WP_012775372.1 LytTR family DNA-binding domain-containing protein -
  QBE57_RS09565 - 1947900..1948559 (+) 660 WP_012028544.1 LiaF transmembrane domain-containing protein -
  QBE57_RS09570 - 1948651..1949931 (+) 1281 WP_012027911.1 MFS transporter -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49824.31 Da        Isoelectric Point: 5.8740

>NTDB_id=813808 QBE57_RS09545 WP_171935667.1 1944320..1945687(+) (radA) [Streptococcus suis strain HBXY-SL]
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
CVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFMGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=813808 QBE57_RS09545 WP_171935667.1 1944320..1945687(+) (radA) [Streptococcus suis strain HBXY-SL]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTACCTGGGTCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGTCCCATGAAACTCAATGAAGTGTCATCCATTCAAGTGGCTCGCACTAAGACTAACATGGAGGAGTTCAAC
TGCGTCCTCGGTGGCGGTGTGGTACCGGGGAGTCTAGTTCTCATTGGCGGCGATCCAGGGATTGGCAAGTCCACCTTGCT
CCTGCAAGTATCCACTCAGCTGTCTACCATTGGCACCGTCCTCTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGAGCGGAACGCTTGGGCGACATTGACAGCGAGTTCTATCTCTATGCAGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGTCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTACGTGAAGTGACCAATGAGCTCATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGAACCTTGGCTGGACCGCGGACCTTGGAGCACATGGTAGACACCGTTCTCTATTTTGAAGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAATCGCTTCGGCTCCACCAATGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTCCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGAGCGACTGGCTCGG
CTATTGTCGTGACCATGGAGGGTACCCGCCCAATCCTTGCGGAAGTGCAGGCTCTGGTGACGCCGACTATGTTTGGCAAT
GCCAAGCGGACCACGACAGGACTGGATTTCAACCGTGCTAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
GCTCCAAAACCAAGACGCCTACCTCAAATCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTGGCAGTCGCAG
TTGCCCTTGCTTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATGGGCGAAATCGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGTATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCCAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACCGTTATCGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTAT
TCAACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

AAA domain (AAA_25)

(64-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.15

99.341

0.905
  radA Streptococcus pneumoniae Rx1

90.929

99.341

0.903
  radA Streptococcus pneumoniae D39

90.929

99.341

0.903
  radA Streptococcus pneumoniae R6

90.929

99.341

0.903
  radA Streptococcus pneumoniae TIGR4

90.929

99.341

0.903
  radA Streptococcus mitis SK321

90.708

99.341

0.901
  radA Bacillus subtilis subsp. subtilis str. 168

62.252

99.56

0.62