Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   QBE57_RS08015 Genome accession   NZ_CP121670
Coordinates   1660298..1660591 (-) Length   97 a.a.
NCBI ID   WP_011921722.1    Uniprot ID   -
Organism   Streptococcus suis strain HBXY-SL     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1655298..1665591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBE57_RS07990 - 1656376..1656927 (-) 552 WP_012774908.1 folate family ECF transporter S component -
  QBE57_RS07995 - 1657242..1658429 (-) 1188 WP_012775422.1 acetate kinase -
  QBE57_RS08000 comYH 1658479..1659432 (-) 954 WP_011922562.1 class I SAM-dependent methyltransferase Machinery gene
  QBE57_RS08005 comGG 1659489..1659899 (-) 411 WP_011921724.1 competence type IV pilus minor pilin ComGG -
  QBE57_RS08010 comGF/cglF 1659877..1660311 (-) 435 WP_011922561.1 competence type IV pilus minor pilin ComGF Machinery gene
  QBE57_RS08015 comYE 1660298..1660591 (-) 294 WP_011921722.1 competence type IV pilus minor pilin ComGE Machinery gene
  QBE57_RS08020 comGD 1660563..1660970 (-) 408 WP_011921721.1 competence type IV pilus minor pilin ComGD -
  QBE57_RS08025 comYC 1660951..1661232 (-) 282 WP_011921720.1 competence type IV pilus major pilin ComGC Machinery gene
  QBE57_RS08030 comYB 1661234..1662271 (-) 1038 WP_011921719.1 competence type IV pilus assembly protein ComGB Machinery gene
  QBE57_RS08035 comYA 1662183..1663133 (-) 951 WP_011921718.1 competence type IV pilus ATPase ComGA Machinery gene
  QBE57_RS08040 - 1663219..1664162 (+) 944 Protein_1579 S66 family peptidase -
  QBE57_RS08045 - 1664197..1664562 (-) 366 WP_002936568.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10817.70 Da        Isoelectric Point: 9.8348

>NTDB_id=813793 QBE57_RS08015 WP_011921722.1 1660298..1660591(-) (comYE) [Streptococcus suis strain HBXY-SL]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQVWELEQQEVFNLAQMAVQTKQDDLALNGVAVQVQRTAE
RVAVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=813793 QBE57_RS08015 WP_011921722.1 1660298..1660591(-) (comYE) [Streptococcus suis strain HBXY-SL]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCGACTCTAGTGACCAT
TTGCAGCTTGATTTTATCAGCTGTGGATGCAGGTCGTAGGCGACAGGTTTGGGAATTGGAACAACAGGAGGTTTTCAACT
TAGCACAGATGGCTGTCCAGACAAAACAAGATGACCTAGCCTTAAACGGAGTTGCAGTTCAGGTTCAACGAACTGCGGAA
AGAGTTGCGGTTTTCCATGAAGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

51.546

100

0.515
  comYE Streptococcus mutans UA159

51.546

100

0.515
  comGE/cglE Streptococcus pneumoniae Rx1

38.043

94.845

0.361
  comGE/cglE Streptococcus pneumoniae D39

38.043

94.845

0.361
  comGE/cglE Streptococcus pneumoniae R6

38.043

94.845

0.361
  comGE/cglE Streptococcus pneumoniae TIGR4

38.043

94.845

0.361