Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF/cglF   Type   Machinery gene
Locus tag   QBE57_RS08010 Genome accession   NZ_CP121670
Coordinates   1659877..1660311 (-) Length   144 a.a.
NCBI ID   WP_011922561.1    Uniprot ID   -
Organism   Streptococcus suis strain HBXY-SL     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1654877..1665311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBE57_RS07985 - 1655064..1656320 (-) 1257 WP_011921729.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  QBE57_RS07990 - 1656376..1656927 (-) 552 WP_012774908.1 folate family ECF transporter S component -
  QBE57_RS07995 - 1657242..1658429 (-) 1188 WP_012775422.1 acetate kinase -
  QBE57_RS08000 comYH 1658479..1659432 (-) 954 WP_011922562.1 class I SAM-dependent methyltransferase Machinery gene
  QBE57_RS08005 comGG 1659489..1659899 (-) 411 WP_011921724.1 competence type IV pilus minor pilin ComGG -
  QBE57_RS08010 comGF/cglF 1659877..1660311 (-) 435 WP_011922561.1 competence type IV pilus minor pilin ComGF Machinery gene
  QBE57_RS08015 comYE 1660298..1660591 (-) 294 WP_011921722.1 competence type IV pilus minor pilin ComGE Machinery gene
  QBE57_RS08020 comGD 1660563..1660970 (-) 408 WP_011921721.1 competence type IV pilus minor pilin ComGD -
  QBE57_RS08025 comYC 1660951..1661232 (-) 282 WP_011921720.1 competence type IV pilus major pilin ComGC Machinery gene
  QBE57_RS08030 comYB 1661234..1662271 (-) 1038 WP_011921719.1 competence type IV pilus assembly protein ComGB Machinery gene
  QBE57_RS08035 comYA 1662183..1663133 (-) 951 WP_011921718.1 competence type IV pilus ATPase ComGA Machinery gene
  QBE57_RS08040 - 1663219..1664162 (+) 944 Protein_1579 S66 family peptidase -
  QBE57_RS08045 - 1664197..1664562 (-) 366 WP_002936568.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16491.85 Da        Isoelectric Point: 5.9234

>NTDB_id=813792 QBE57_RS08010 WP_011922561.1 1659877..1660311(-) (comGF/cglF) [Streptococcus suis strain HBXY-SL]
MLKSKIPAFTLLECLVVLVILSGSLLIFEGLSKLLVQEAHYQGQTVQKEWLVFSSQLRSEWDQAELVKVENGKVYVNKGE
QALAFGKSWSDDFRKTNDRGQGYQPMLYQVDSAAISQENQLVRIDFSFKNGEERTFIYAFKEKS

Nucleotide


Download         Length: 435 bp        

>NTDB_id=813792 QBE57_RS08010 WP_011922561.1 1659877..1660311(-) (comGF/cglF) [Streptococcus suis strain HBXY-SL]
TTGTTAAAAAGTAAAATTCCTGCTTTTACACTCTTGGAATGTTTGGTGGTTCTAGTCATTCTGTCAGGTAGCCTCTTGAT
TTTTGAAGGCTTATCCAAATTACTAGTCCAGGAAGCGCATTATCAAGGTCAGACCGTTCAAAAGGAATGGTTGGTCTTCT
CTAGCCAATTGCGGTCGGAGTGGGACCAGGCTGAATTGGTCAAGGTTGAAAATGGCAAGGTCTATGTCAACAAAGGTGAA
CAGGCTTTGGCCTTTGGCAAGTCATGGTCGGATGATTTTCGGAAAACAAATGATAGAGGCCAGGGTTACCAACCCATGCT
CTATCAGGTGGATAGCGCAGCCATTTCCCAAGAAAACCAGCTGGTGCGCATCGACTTTAGCTTTAAAAACGGAGAGGAGC
GAACCTTTATCTATGCTTTTAAAGAAAAAAGTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(37-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF/cglF Streptococcus pneumoniae TIGR4

52.482

97.917

0.514
  comGF/cglF Streptococcus pneumoniae Rx1

52.482

97.917

0.514
  comGF/cglF Streptococcus pneumoniae D39

52.482

97.917

0.514
  comGF/cglF Streptococcus pneumoniae R6

52.482

97.917

0.514
  comGF/cglF Streptococcus mitis NCTC 12261

52.985

93.056

0.493
  comYF Streptococcus mutans UA140

48.611

100

0.486
  comYF Streptococcus mutans UA159

47.917

100

0.479
  comGF/cglF Streptococcus mitis SK321

50

93.056

0.465
  comGF Lactococcus lactis subsp. cremoris KW2

45.39

97.917

0.444