Detailed information NTG0081371

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: KI219_RS13265
• Genome accession: NZ_AP023089
• Coordinates: 2672902..2674014 (+)
• Length: 370 a.a.
• NCBI ID: WP_003178089.1
• Uniprot ID: A0A415J9T0
• Organism: Bacillus paralicheniformis strain RSC-2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2667902..2679014

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KI219_RS13240 (RSC2_02755)	rnpA	2668631..2668990 (-)	360	WP_020453656.1	ribonuclease P protein component	-
KI219_RS13245 (RSC2_02756)	rpmH	2669075..2669209 (-)	135	WP_003178075.1	50S ribosomal protein L34	-
KI219_RS13250	dnaA	2669850..2671189 (+)	1340	Protein_2646	chromosomal replication initiator protein DnaA	-
KI219_RS13255 (RSC2_02759)	dnaN	2671367..2672503 (+)	1137	WP_023856796.1	DNA polymerase III subunit beta	-
KI219_RS13260 (RSC2_02761)	yaaA	2672670..2672885 (+)	216	WP_003178084.1	S4 domain-containing protein YaaA	-
KI219_RS13265 (RSC2_02762)	recF	2672902..2674014 (+)	1113	WP_003178089.1	DNA replication/repair protein RecF	Machinery gene
KI219_RS13270 (RSC2_02763)	-	2674032..2674274 (+)	243	WP_023856795.1	extracellular matrix/biofilm biosynthesis regulator RemA family protein	-
KI219_RS13275 (RSC2_02764)	gyrB	2674335..2676248 (+)	1914	WP_031305110.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
KI219_RS13280 (RSC2_02765)	gyrA	2676440..2678908 (+)	2469	WP_023856793.1	DNA gyrase subunit A	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42482.33 Da
• Isoelectric Point: 6.7331

>NTDB_id=81371 KI219_RS13265 WP_003178089.1 2672902..2674014(+) (recF) [Bacillus paralicheniformis strain RSC-2]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide

• Length: 1113 bp

>NTDB_id=81371 KI219_RS13265 WP_003178089.1 2672902..2674014(+) (recF) [Bacillus paralicheniformis strain RSC-2]
TTGTATATCCAAAATCTTACATTATCATCTTACCGTAATTATGAGCGCCTTGACCTTCAATTTGAGAACAAAGTGAATGT
GATTATCGGAGAGAACGCTCAAGGAAAAACGAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCGAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCT
GTTCCCATTCAGCTCGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTCAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTTGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGATATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCCTGAAACAGCTTCAAACGAGAAAGCAAACCGACCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTGTCAGGTCCCCACAG
GGATGATGTTCTCTTCTACGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGCCAGCAGCGAACGACTGCTTTGT
CGCTTAAATTGGCTGAAATCGATTTGATTCAGGAAGAGATAGGAGAATATCCGATTCTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGTGTTCAAACATTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGAGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-346)

3D structure

• AlphaFold DB: A0A415J9T0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	89.13	99.459	0.886