Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KI219_RS10435 Genome accession   NZ_AP023089
Coordinates   2081350..2082039 (-) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus paralicheniformis strain RSC-2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2076350..2087039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI219_RS10400 (RSC2_02174) - 2076518..2076994 (-) 477 WP_023856391.1 flagellar protein FlgN -
  KI219_RS10405 (RSC2_02175) flgM 2077013..2077279 (-) 267 WP_020453113.1 flagellar biosynthesis anti-sigma factor FlgM -
  KI219_RS10410 (RSC2_02176) - 2077359..2077778 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  KI219_RS10415 (RSC2_02177) comFC 2077837..2078574 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  KI219_RS10420 (RSC2_02178) - 2078531..2078815 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  KI219_RS10425 (RSC2_02179) comFA 2078870..2080264 (-) 1395 WP_020453117.1 DEAD/DEAH box helicase Machinery gene
  KI219_RS10430 (RSC2_02180) - 2080388..2081230 (-) 843 WP_020453118.1 DegV family protein -
  KI219_RS10435 (RSC2_02181) degU 2081350..2082039 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  KI219_RS10440 (RSC2_02182) degS 2082121..2083278 (-) 1158 WP_020453119.1 histidine kinase Regulator
  KI219_RS10445 (RSC2_02183) - 2083501..2084139 (+) 639 WP_023856394.1 YigZ family protein -
  KI219_RS10450 (RSC2_02184) - 2084154..2085233 (+) 1080 WP_145645335.1 LCP family protein -
  KI219_RS10455 (RSC2_02185) - 2085286..2085669 (-) 384 WP_145645337.1 hypothetical protein -
  KI219_RS10460 (RSC2_02186) - 2085778..2086842 (-) 1065 WP_025810697.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=81362 KI219_RS10435 WP_003185730.1 2081350..2082039(-) (degU) [Bacillus paralicheniformis strain RSC-2]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=81362 KI219_RS10435 WP_003185730.1 2081350..2082039(-) (degU) [Bacillus paralicheniformis strain RSC-2]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTGGTAA
TCATGGATATTAATATGCCGAATGTAAACGGCGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCTATCCATGACGATGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGCGGCTATCTGCTGAAAGA
AATGGATGCCGACACGCTGATCGAAGCCGTGAAAGTTGTGGCTGAAGGCGGATCTTATCTGCATCCTAAGGTTACTCATA
ATCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCACGCTCAACATGAAGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTTACCAGAAGGGAATGCGAGGTTCTGCAGATGCTGGCGGACGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTCGTTGTAGCCATTAAAAATGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987

Multiple sequence alignment