Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   R8474_RS04540 Genome accession   NZ_AP026914
Coordinates   882667..884334 (+) Length   555 a.a.
NCBI ID   WP_000923570.1    Uniprot ID   Q8DPN3
Organism   Streptococcus pneumoniae strain PZ900700003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 877667..889334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8474_RS04505 (PC0003_08950) - 877850..878152 (+) 303 WP_000985093.1 bacteriocin immunity protein -
  R8474_RS04510 (PC0003_08960) udk 878260..878898 (+) 639 WP_001181378.1 uridine kinase -
  R8474_RS04515 (PC0003_08970) xseA 879026..880366 (+) 1341 WP_050209991.1 exodeoxyribonuclease VII large subunit -
  R8474_RS04520 (PC0003_08980) - 880344..880556 (+) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  R8474_RS04525 (PC0003_08990) - 880553..881428 (+) 876 WP_000743808.1 polyprenyl synthetase family protein -
  R8474_RS04530 (PC0003_09000) - 881421..882236 (+) 816 WP_001041073.1 TlyA family RNA methyltransferase -
  R8474_RS04535 (PC0003_09010) - 882229..882660 (+) 432 WP_001034412.1 arginine repressor -
  R8474_RS04540 (PC0003_09020) recN 882667..884334 (+) 1668 WP_000923570.1 DNA repair protein RecN Machinery gene
  R8474_RS04545 (PC0003_09030) - 884336..885064 (+) 729 WP_000133332.1 metallophosphoesterase family protein -
  R8474_RS04550 (PC0003_09040) lepA 885143..886966 (+) 1824 WP_001047222.1 translation elongation factor 4 -
  R8474_RS04555 (PC0003_09050) - 887047..887469 (-) 423 WP_317642013.1 hypothetical protein -
  R8474_RS04560 (PC0003_09060) - 887649..888125 (+) 477 Protein_899 PTS sugar transporter subunit IIA -
  R8474_RS04565 (PC0003_09070) - 888163..888465 (+) 303 WP_000590566.1 PTS sugar transporter subunit IIB -
  R8474_RS04570 - 888473..889214 (+) 742 Protein_901 transposase family protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62792.22 Da        Isoelectric Point: 4.6517

>NTDB_id=81357 R8474_RS04540 WP_000923570.1 882667..884334(+) (recN) [Streptococcus pneumoniae strain PZ900700003]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=81357 R8474_RS04540 WP_000923570.1 882667..884334(+) (recN) [Streptococcus pneumoniae strain PZ900700003]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGCCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DPN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44

Multiple sequence alignment