Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RW078_RS10210 Genome accession   NZ_CP136178
Coordinates   2153617..2154252 (-) Length   211 a.a.
NCBI ID   WP_133238728.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A045     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2148617..2159252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW078_RS10185 (RW078_10185) - 2148673..2149653 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  RW078_RS10190 (RW078_10190) kdsB 2149665..2150426 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RW078_RS10195 (RW078_10195) lpxK 2150436..2151446 (-) 1011 WP_317858586.1 tetraacyldisaccharide 4'-kinase -
  RW078_RS10200 (RW078_10200) msbA 2151449..2153176 (-) 1728 WP_001070725.1 lipid A export permease/ATP-binding protein MsbA -
  RW078_RS10205 (RW078_10205) - 2153173..2153601 (-) 429 WP_000669684.1 ExbD/TolR family protein -
  RW078_RS10210 (RW078_10210) exbB 2153617..2154252 (-) 636 WP_133238728.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RW078_RS10215 (RW078_10215) - 2154302..2155189 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  RW078_RS10220 (RW078_10220) - 2155186..2155968 (-) 783 WP_000057212.1 ParA family protein -
  RW078_RS10225 (RW078_10225) rsmG 2155990..2156622 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  RW078_RS10230 (RW078_10230) murU 2156710..2157399 (-) 690 WP_000646460.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  RW078_RS10235 (RW078_10235) - 2157399..2158412 (-) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23210.15 Da        Isoelectric Point: 6.4861

>NTDB_id=813545 RW078_RS10210 WP_133238728.1 2153617..2154252(-) (exbB) [Acinetobacter baumannii strain ABO21-A045]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVIINLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=813545 RW078_RS10210 WP_133238728.1 2153617..2154252(-) (exbB) [Acinetobacter baumannii strain ABO21-A045]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAATAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCCATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

42.857

92.891

0.398