Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   RW078_RS09620 Genome accession   NZ_CP136178
Coordinates   2033744..2034340 (-) Length   198 a.a.
NCBI ID   WP_000490551.1    Uniprot ID   A0AA36KBA4
Organism   Acinetobacter baumannii strain ABO21-A045     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2028744..2039340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW078_RS09585 (RW078_09585) - 2028829..2029680 (-) 852 WP_001271636.1 AAA family ATPase -
  RW078_RS09590 (RW078_09590) - 2029710..2030096 (-) 387 WP_001206390.1 hypothetical protein -
  RW078_RS09595 (RW078_09595) - 2030089..2030349 (-) 261 WP_188146221.1 YcgL domain-containing protein -
  RW078_RS09600 (RW078_09600) - 2030837..2031001 (+) 165 WP_000086293.1 hypothetical protein -
  RW078_RS09605 (RW078_09605) - 2031072..2031413 (-) 342 WP_031987728.1 hypothetical protein -
  RW078_RS09610 (RW078_09610) - 2031544..2031810 (-) 267 WP_000183704.1 hypothetical protein -
  RW078_RS09615 (RW078_09615) - 2032313..2033437 (-) 1125 WP_000486121.1 ribonuclease D -
  RW078_RS09620 (RW078_09620) recR 2033744..2034340 (-) 597 WP_000490551.1 recombination mediator RecR Machinery gene
  RW078_RS09625 (RW078_09625) - 2034350..2034679 (-) 330 WP_001024697.1 YbaB/EbfC family nucleoid-associated protein -
  RW078_RS09630 (RW078_09630) - 2034945..2035181 (-) 237 WP_000917295.1 hypothetical protein -
  RW078_RS09635 (RW078_09635) - 2035359..2036546 (-) 1188 WP_271050698.1 O-succinylhomoserine sulfhydrylase -
  RW078_RS09640 (RW078_09640) - 2036680..2037765 (+) 1086 WP_317858557.1 alpha/beta fold hydrolase -
  RW078_RS09645 (RW078_09645) - 2037845..2038612 (-) 768 WP_065712255.1 class I SAM-dependent methyltransferase -
  RW078_RS09650 (RW078_09650) - 2038785..2039159 (-) 375 WP_016654124.1 TonB C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21801.90 Da        Isoelectric Point: 6.1660

>NTDB_id=813540 RW078_RS09620 WP_000490551.1 2033744..2034340(-) (recR) [Acinetobacter baumannii strain ABO21-A045]
MFSDRFEQLVQALRILPSVGPKSAQRMALHLLMKNREGAFALAHALHEASSYIHECSVCHSLTEHEICDICASTERDDQL
LCVVESPADVMAIEQSGSFRGKYHVLGGHLSPLDGIGPEEIGIPYLIQRLSQGTIEEVILATNATVEGQATAHYLVEATK
HLPIHMTRIAQGVPQGGELEYVDSHTLSQAVHNRMRMK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=813540 RW078_RS09620 WP_000490551.1 2033744..2034340(-) (recR) [Acinetobacter baumannii strain ABO21-A045]
GTGTTTAGTGATAGATTTGAACAACTCGTTCAAGCTTTACGTATTTTGCCTAGCGTTGGACCGAAGTCGGCCCAACGTAT
GGCTTTACATCTTTTGATGAAAAATCGTGAAGGTGCATTTGCTTTAGCACATGCTCTACATGAAGCATCAAGTTATATTC
ATGAATGTAGTGTTTGCCACTCTTTAACAGAGCACGAAATTTGTGATATTTGTGCTTCAACAGAAAGAGATGATCAATTG
CTTTGTGTAGTTGAGTCCCCGGCAGATGTTATGGCAATCGAGCAAAGTGGTAGTTTTCGTGGCAAATACCATGTGTTGGG
TGGACACCTTTCTCCATTAGATGGAATCGGGCCAGAAGAAATAGGCATTCCTTATCTAATCCAACGTTTAAGCCAAGGTA
CGATCGAAGAAGTCATTTTGGCAACTAATGCTACTGTGGAAGGTCAGGCTACAGCGCATTATTTGGTTGAAGCGACGAAG
CATTTACCTATTCACATGACACGTATTGCTCAAGGCGTACCACAAGGTGGTGAGCTTGAATATGTGGATAGTCATACCTT
AAGTCAAGCTGTTCATAACCGTATGCGTATGAAATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36KBA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.538

93.939

0.475
  recR Bacillus subtilis subsp. subtilis str. 168

43.523

97.475

0.424