Detailed information    

insolico Bioinformatically predicted

Overview


Name   hns   Type   Regulator
Locus tag   MTS71_RS10695 Genome accession   NZ_CP121612
Coordinates   2229075..2229401 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain JAB117     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2227578..2228510 2229075..2229401 flank 565


Gene organization within MGE regions


Location: 2227578..2229401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTS71_RS10685 (MTS71_10685) - 2227578..2228510 (-) 933 WP_001043692.1 IS5-like element ISAba13 family transposase -
  MTS71_RS10690 (MTS71_10690) - 2228566..2228880 (+) 315 Protein_2069 thioesterase family protein -
  MTS71_RS10695 (MTS71_10695) hns 2229075..2229401 (+) 327 WP_000801427.1 H-NS histone family protein Regulator

Sequence


Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=813475 MTS71_RS10695 WP_000801427.1 2229075..2229401(+) (hns) [Acinetobacter baumannii strain JAB117]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=813475 MTS71_RS10695 WP_000801427.1 2229075..2229401(+) (hns) [Acinetobacter baumannii strain JAB117]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains


Predicted by InterproScan.

(12-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1