Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   MTS34_RS14920 Genome accession   NZ_CP121609
Coordinates   3054573..3055391 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain JAB186     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3049573..3060391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTS34_RS14905 (MTS34_14905) pilE 3049790..3050215 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  MTS34_RS14910 (MTS34_14910) pilY2 3050212..3050694 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  MTS34_RS14915 (MTS34_14915) pilY1 3050707..3054561 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  MTS34_RS14920 (MTS34_14920) pilX 3054573..3055391 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  MTS34_RS14925 (MTS34_14925) pilW 3055388..3056389 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  MTS34_RS14930 (MTS34_14930) pilV 3056390..3056950 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  MTS34_RS14935 (MTS34_14935) fimU 3056944..3057417 (-) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  MTS34_RS14940 (MTS34_14940) ispH 3057587..3058537 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  MTS34_RS14945 (MTS34_14945) gmk 3058660..3059289 (+) 630 WP_000015937.1 guanylate kinase -
  MTS34_RS14950 (MTS34_14950) rpoZ 3059362..3059640 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  MTS34_RS14955 (MTS34_14955) - 3059679..3059808 (+) 130 Protein_2920 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=813422 MTS34_RS14920 WP_000149374.1 3054573..3055391(-) (pilX) [Acinetobacter baumannii strain JAB186]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=813422 MTS34_RS14920 WP_000149374.1 3054573..3055391(-) (pilX) [Acinetobacter baumannii strain JAB186]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993