Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RWU60_RS10430 Genome accession   NZ_CP136172
Coordinates   2230974..2231609 (-) Length   211 a.a.
NCBI ID   WP_000264042.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A051     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2225974..2236609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWU60_RS10405 (RWU60_10405) - 2226030..2227010 (-) 981 WP_317856677.1 DNA polymerase III subunit delta' -
  RWU60_RS10410 (RWU60_10410) kdsB 2227022..2227783 (-) 762 WP_000680698.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RWU60_RS10415 (RWU60_10415) lpxK 2227793..2228803 (-) 1011 WP_317856678.1 tetraacyldisaccharide 4'-kinase -
  RWU60_RS10420 (RWU60_10420) msbA 2228806..2230533 (-) 1728 WP_001070738.1 lipid A export permease/ATP-binding protein MsbA -
  RWU60_RS10425 (RWU60_10425) - 2230530..2230958 (-) 429 WP_000669680.1 ExbD/TolR family protein -
  RWU60_RS10430 (RWU60_10430) exbB 2230974..2231609 (-) 636 WP_000264042.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RWU60_RS10435 (RWU60_10435) - 2231659..2232546 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  RWU60_RS10440 (RWU60_10440) - 2232543..2233325 (-) 783 WP_000057212.1 ParA family protein -
  RWU60_RS10445 (RWU60_10445) rsmG 2233347..2233979 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  RWU60_RS10450 (RWU60_10450) murU 2234067..2234756 (-) 690 WP_000646460.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  RWU60_RS10455 (RWU60_10455) - 2234756..2235769 (-) 1014 WP_317856679.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23224.13 Da        Isoelectric Point: 6.2379

>NTDB_id=813396 RWU60_RS10430 WP_000264042.1 2230974..2231609(-) (exbB) [Acinetobacter baumannii strain ABO21-A051]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEYQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=813396 RWU60_RS10430 WP_000264042.1 2230974..2231609(-) (exbB) [Acinetobacter baumannii strain ABO21-A051]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TTATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGTATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAGAAAAATATTAA
CTTCTTAGGAACCTTAAGTGCTATTGCGCCTTTACTAGGACTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCGCTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393