Detailed information NTG0081336

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: R8474_RS01835
• Genome accession: NZ_AP026914
• Coordinates: 354504..356870 (-)
• Length: 788 a.a.
• NCBI ID: WP_081573894.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain PZ900700003
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 349504..361870

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8474_RS01805 (PC0003_03490)	vraR	349855..350487 (+)	633	WP_000698432.1	response regulator transcription factor	Regulator
R8474_RS01810	-	350488..350730 (+)	243	Protein_354	DNA alkylation repair protein	-
R8474_RS01815	-	350655..351257 (+)	603	Protein_355	DNA alkylation repair protein	-
R8474_RS01820 (PC0003_03520)	-	351716..352318 (+)	603	Protein_356	trypsin-like serine peptidase	-
R8474_RS01825 (PC0003_03530)	-	352674..353012 (+)	339	WP_025172171.1	tyrosine-type recombinase/integrase	-
R8474_RS01830 (PC0003_03540)	tig	353173..354456 (+)	1284	WP_000116465.1	trigger factor	-
R8474_RS01835 (PC0003_03550)	recD/recD2/recDB	354504..356870 (-)	2367	WP_081573894.1	ATP-dependent RecD-like DNA helicase	Machinery gene
R8474_RS01840	-	356947..357069 (-)	123	WP_001815645.1	hypothetical protein	-
R8474_RS01845 (PC0003_03560)	lepB	357149..357763 (-)	615	WP_001048155.1	signal peptidase I	-
R8474_RS01850 (PC0003_03570)	rnhC	357775..358647 (-)	873	WP_050104719.1	ribonuclease HIII	-
R8474_RS01855 (PC0003_03580)	zapA	358734..359036 (+)	303	WP_000002019.1	cell division protein ZapA	-
R8474_RS01860 (PC0003_03590)	-	359033..359581 (+)	549	WP_050220863.1	CvpA family protein	-

Sequence

Protein

• Length: 788 a.a.
• Molecular weight: 88537.31 Da
• Isoelectric Point: 4.5313

>NTDB_id=81336 R8474_RS01835 WP_081573894.1 354504..356870(-) (recD/recD2/recDB) [Streptococcus pneumoniae strain PZ900700003]
MEVYFSGTIERIIFENPSNFYRILLLEIDDTDAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYDRA
KPTSKGLVKYFSSSHFKGIGLKTAQKIVDTYGENTIDEILQHPEKLEGIAGLSAKNREAFVSTLRLNYGTEMVLAKLANY
GIPNKLAFQIQDFYKEETLDVVENYPYQLVEDIKGLGFTIADQLAEELGIESQAPERFRAGLVHSLFQACMETGDTYVEA
RDLLEQTLTLLESSRPVELDPSQVAQELSYLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLIRILEKGEQKSHDLETIQKH
ITTIEEELGIEYDNIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDFRKKSNLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDECSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLHIPLIPQTRLEKIYRQSKESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPATIEKILGAALRNGIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPPQKDQLSFEAPQCHYRKRDKVIHLVNDAEINVFNGDLGAITDLIPGKYTESKQDEI
VIDFDGNEVSYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASRRMLERNLIYTAITRAKSKLILLGELQAFDYATQ
HIGTARKTYLIERFSDLLENVEEKQQAVSETVTSSASEQSYILTEENWDSIPAMIGITDTDLKEIFGK

Nucleotide

• Length: 2367 bp

>NTDB_id=81336 R8474_RS01835 WP_081573894.1 354504..356870(-) (recD/recD2/recDB) [Streptococcus pneumoniae strain PZ900700003]
ATGGAAGTTTATTTTTCAGGAACCATTGAACGGATTATTTTTGAAAATCCCAGCAATTTTTATCGCATCCTCCTCCTAGA
AATCGACGATACGGACGCAGAGGATTTTGATGATTTTGAAATCATTGTCACAGGAACCATGGCTGATGTAATTGAGGGCG
AAGACTATACTTTTTGGGGGCAAATTGTCCAGCACTCCAAGTATGGAGAACAACTGCAAATCAGTCGTTATGATCGCGCA
AAACCAACTAGTAAGGGATTGGTCAAGTACTTTTCAAGTAGCCATTTCAAGGGGATTGGTCTCAAGACAGCTCAGAAAAT
CGTAGATACCTATGGCGAAAATACCATTGATGAAATTTTGCAACACCCAGAAAAGTTAGAAGGCATCGCAGGACTCTCTG
CCAAAAATCGCGAGGCTTTCGTCTCCACTCTCCGTCTCAACTACGGAACGGAGATGGTTTTGGCCAAACTAGCCAACTAC
GGCATTCCCAACAAACTAGCCTTTCAGATTCAAGACTTTTACAAGGAAGAAACCCTTGATGTGGTTGAAAATTATCCCTA
CCAGCTGGTTGAGGATATCAAGGGTTTGGGCTTTACCATTGCTGACCAACTAGCTGAGGAACTAGGCATCGAAAGTCAGG
CTCCTGAACGCTTCCGCGCCGGTCTAGTTCACAGTCTTTTTCAGGCCTGTATGGAAACAGGGGACACCTATGTTGAAGCA
CGGGATTTGCTGGAACAAACCCTTACTCTCCTTGAGTCTTCCCGTCCCGTAGAACTAGACCCCAGCCAAGTTGCCCAAGA
GCTCTCCTACCTGATCGAAGAAGACAAGGTTCAGCAGATTGATACCAAGATCTTTGACAACAGCCTCTTTTTCGCTGAGG
AAGGCATCCGCAGTCACTTGATTCGTATCCTTGAAAAAGGAGAACAGAAGAGTCATGATTTAGAAACCATTCAAAAACAT
ATCACTACTATCGAGGAAGAGCTGGGAATTGAGTATGATAACATTCAAAAACAGGCTATCTGTGATGCTATCCAGAATAA
GGTCTTTATCCTGACAGGTGGACCTGGTACTGGTAAGACAACTGTTATCAATGGAATCATCGCTGTTTATGCCCTTTTAG
AAGGACTTGACTTCAGGAAGAAAAGCAATCTGCCCATTCTTCTTGCTGCTCCAACTGGACGAGCCGCTCGCCGCATGAAT
GAATTGACAGGTTTGCCTAGCGCGACCATACACCGCCACTTGGGAATGACAGGTGACGATGATACCAGTCATCTGGAAGA
TTACCTAGATGCTGACTTTATCATCGTGGATGAATGCTCTATGGTAGATACTTGGCTGGCCAATCAACTCTTCTCCAATA
TCTCTTCTAACAGTAAGATCCTCATCGTAGGTGACAGTGATCAGCTACCTTCTGTCAGTCCTGGACAGGTTCTAGCGGAT
CTGCTTCATATTCCTTTGATTCCTCAGACTCGCTTGGAAAAAATTTATCGACAAAGCAAAGAATCAACCATCGTCACCCT
AGCTAGTCAGATTCGACAGGGCATCTTGCCAGCTGATTTCACCCAAAAAAAAGCTGACCGTTCCTACTTTGAAATTGCTA
GTGGCCATATTCCTGCCACCATTGAAAAAATCTTAGGTGCCGCCCTCAGAAATGGTATTCCTGCCCGTGATATCCAAGTT
CTGGCTCCTATGTACCGAGGGACGGCAGGGATTGATGCTATCAATCAGCTCATGCAAGACCTGCTCAATCCCCCACAAAA
AGATCAACTCAGTTTTGAAGCTCCTCAGTGCCACTATCGTAAGAGAGACAAGGTCATTCATTTGGTTAACGATGCTGAAA
TCAATGTCTTTAATGGGGATTTAGGAGCTATCACAGACCTGATTCCTGGTAAATACACCGAATCGAAACAAGACGAGATT
GTCATTGATTTTGATGGTAATGAAGTCTCTTACCCCCGTAACGAATGGTACAAGATTCGCTTGGCCTATGCCATGAGTAT
TCATAAGTCTCAGGGAAGTGAGTTCCCAGTTGTCATCCTACCGATTACTAGTGCTAGCCGACGTATGCTGGAGCGAAATC
TCATCTACACAGCCATTACACGTGCCAAAAGCAAACTCATCTTACTAGGCGAATTACAAGCCTTCGACTATGCTACCCAA
CACATCGGAACTGCCCGAAAAACCTATCTGATTGAACGCTTCAGTGATCTACTGGAGAATGTTGAAGAAAAGCAACAAGC
TGTCTCTGAAACAGTCACATCAAGTGCCTCTGAACAATCCTACATCCTAACCGAAGAAAACTGGGACAGCATTCCAGCCA
TGATTGGGATTACAGACACAGACCTCAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (662-709)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (574-644)

• AAA domain (AAA_30) (332-520)

• Helix-hairpin-helix containing domain (HHH_RecD2) (148-237)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	40.755	97.462	0.397