Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   MTS22_RS18145 Genome accession   NZ_CP121583
Coordinates   3803509..3804327 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain RAB14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3798509..3809327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTS22_RS18110 (MTS22_18110) - 3799092..3799221 (-) 130 Protein_3522 hypothetical protein -
  MTS22_RS18115 (MTS22_18115) rpoZ 3799260..3799538 (-) 279 WP_283072761.1 DNA-directed RNA polymerase subunit omega -
  MTS22_RS18120 (MTS22_18120) gmk 3799611..3800240 (-) 630 WP_000015937.1 guanylate kinase -
  MTS22_RS18125 (MTS22_18125) ispH 3800363..3801313 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  MTS22_RS18130 (MTS22_18130) fimU 3801483..3801956 (+) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  MTS22_RS18135 (MTS22_18135) pilV 3801950..3802510 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  MTS22_RS18140 (MTS22_18140) pilW 3802511..3803512 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  MTS22_RS18145 (MTS22_18145) pilX 3803509..3804327 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  MTS22_RS18150 (MTS22_18150) pilY1 3804339..3808193 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  MTS22_RS18155 (MTS22_18155) pilY2 3808206..3808688 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  MTS22_RS18160 (MTS22_18160) pilE 3808685..3809110 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=813208 MTS22_RS18145 WP_000149374.1 3803509..3804327(+) (pilX) [Acinetobacter baumannii strain RAB14]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=813208 MTS22_RS18145 WP_000149374.1 3803509..3804327(+) (pilX) [Acinetobacter baumannii strain RAB14]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993