Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   KI220_RS17510 Genome accession   NZ_AP023088
Coordinates   3549361..3550161 (-) Length   266 a.a.
NCBI ID   WP_075213036.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain RSC-1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3544361..3555161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI220_RS17480 (RSC1_03544) - 3545339..3545593 (+) 255 WP_020452121.1 DUF2627 domain-containing protein -
  KI220_RS17485 (RSC1_03545) - 3545704..3546429 (-) 726 WP_020452122.1 glycerophosphodiester phosphodiesterase -
  KI220_RS17490 (RSC1_03546) - 3546563..3547183 (-) 621 WP_020452123.1 N-acetylmuramoyl-L-alanine amidase -
  KI220_RS17495 (RSC1_03547) - 3547219..3547524 (-) 306 WP_020452124.1 membrane lipoprotein lipid attachment site-containing protein -
  KI220_RS17500 (RSC1_03549) - 3548024..3548596 (-) 573 WP_224067275.1 serine acetyltransferase -
  KI220_RS17505 (RSC1_03550) - 3548723..3549019 (-) 297 WP_020452126.1 antimicrobial peptide LCI -
  KI220_RS17510 (RSC1_03551) spo0A 3549361..3550161 (-) 801 WP_075213036.1 sporulation transcription factor Spo0A Regulator
  KI220_RS17515 (RSC1_03552) spoIVB 3550451..3551701 (-) 1251 WP_031304732.1 SpoIVB peptidase -
  KI220_RS17520 (RSC1_03553) recN 3551916..3553646 (-) 1731 WP_025811171.1 DNA repair protein RecN Machinery gene
  KI220_RS17525 (RSC1_03554) argR 3553678..3554127 (-) 450 WP_020452129.1 transcriptional regulator ArgR -
  KI220_RS17530 (RSC1_03555) - 3554291..3555136 (-) 846 WP_130569440.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29531.02 Da        Isoelectric Point: 6.6109

>NTDB_id=81311 KI220_RS17510 WP_075213036.1 3549361..3550161(-) (spo0A) [Bacillus paralicheniformis strain RSC-1]
MEKIKVCVADDNRELVGLLSEYIEGQSDMEVLGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSQLTHRAPSSQSSVLRPQSESPKKNLDASITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=81311 KI220_RS17510 WP_075213036.1 3549361..3550161(-) (spo0A) [Bacillus paralicheniformis strain RSC-1]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGCGAATATATCGAGGGACAAAG
CGACATGGAAGTACTTGGTGTCGCATACAACGGACAGGAATGCCTTTCGTTGTTTAAAGACAAGGAGCCCGATGTGCTTG
TGCTGGATATTATCATGCCTCACCTCGACGGATTGGCCGTTCTTGAAAGGCTGAGGGAATCGCAGCTTAAAAAGCAGCCG
AATGTCATTATGCTGACGGCGTTCGGTCAGGAAGACGTGACGAAAAAAGCTGTAGATTTGGGCGCGTCGTATTTTATTTT
GAAGCCTTTTGACATGGAGAACTTAGTCGGCCATATCCGCCAGGTCAGCGGAAACGGATCTCAATTGACACACCGTGCCC
CATCTTCTCAAAGCAGTGTGCTTCGGCCGCAGTCGGAATCGCCGAAGAAAAACCTGGACGCCAGCATTACGACCATCATC
CACGAAATCGGCGTGCCCGCTCATATAAAAGGCTATTTATACTTAAGGGAAGCCATCTCCATGGTGTATAACGACATCGA
ACTGCTCGGAAGCATTACAAAAGTGCTTTATCCGGATATCGCCAAAAAATTCAACACGACTGCAAGCCGAGTCGAACGGG
CGATTCGCCACGCCATCGAAGTCGCATGGAGCAGAGGCAATATCGACTCGATTTCGTCACTTTTCGGCTACACAGTCAGC
ATGTCAAAAGCCAAGCCGACGAATTCAGAATTCATCGCGATGGTCGCAGACAAGCTGAGATTGGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.884

100

0.932

Multiple sequence alignment