Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   MTS49_RS00950 Genome accession   NZ_CP121577
Coordinates   177899..178381 (-) Length   160 a.a.
NCBI ID   WP_001046420.1    Uniprot ID   A0A7U3Y2Y6
Organism   Acinetobacter baumannii strain RAB55     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 172899..183381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTS49_RS00915 (MTS49_00915) - 173005..174039 (+) 1035 WP_001189447.1 lipase secretion chaperone -
  MTS49_RS00920 (MTS49_00920) - 174154..175095 (+) 942 WP_085916958.1 triacylglycerol lipase -
  MTS49_RS00925 (MTS49_00925) rplS 175148..175516 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  MTS49_RS00930 (MTS49_00930) trmD 175725..176465 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  MTS49_RS00935 (MTS49_00935) rimM 176511..177059 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  MTS49_RS00940 (MTS49_00940) rpsP 177079..177330 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  MTS49_RS00945 (MTS49_00945) pilE 177477..177902 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  MTS49_RS00950 (MTS49_00950) pilY2 177899..178381 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  MTS49_RS00955 (MTS49_00955) pilY1 178394..182248 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  MTS49_RS00960 (MTS49_00960) pilX 182260..183078 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17548.77 Da        Isoelectric Point: 8.4817

>NTDB_id=813080 MTS49_RS00950 WP_001046420.1 177899..178381(-) (pilY2) [Acinetobacter baumannii strain RAB55]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSASNGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=813080 MTS49_RS00950 WP_001046420.1 177899..178381(-) (pilY2) [Acinetobacter baumannii strain RAB55]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTTCTAATGGTCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y2Y6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

97.5

100

0.975
  comE Acinetobacter baylyi ADP1

40.116

100

0.431