Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   F6I35_RS09470 Genome accession   NZ_CP136160
Coordinates   1791465..1794290 (-) Length   941 a.a.
NCBI ID   WP_070672619.1    Uniprot ID   A0ABS3GEL0
Organism   Streptococcus anginosus strain UMB8616     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1786465..1799290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6I35_RS09440 (F6I35_0009435) hxlB 1787173..1787712 (-) 540 WP_070654278.1 6-phospho-3-hexuloisomerase -
  F6I35_RS09445 (F6I35_0009440) - 1787730..1788182 (-) 453 WP_070654279.1 PTS sugar transporter subunit IIA -
  F6I35_RS09450 (F6I35_0009445) - 1788192..1788482 (-) 291 WP_024052420.1 PTS sugar transporter subunit IIB -
  F6I35_RS09455 (F6I35_0009450) - 1788507..1789862 (-) 1356 WP_070584422.1 PTS galactitol transporter subunit IIC -
  F6I35_RS09460 (F6I35_0009455) - 1789901..1790419 (-) 519 WP_024052422.1 RpiB/LacA/LacB family sugar-phosphate isomerase -
  F6I35_RS09465 (F6I35_0009460) - 1790595..1791347 (+) 753 WP_083308037.1 DeoR/GlpR family DNA-binding transcription regulator -
  F6I35_RS09470 (F6I35_0009465) uvrA 1791465..1794290 (-) 2826 WP_070672619.1 excinuclease ABC subunit UvrA Machinery gene
  F6I35_RS09475 (F6I35_0009470) - 1794413..1795357 (+) 945 WP_003030529.1 magnesium transporter CorA family protein -
  F6I35_RS09480 (F6I35_0009475) - 1795373..1796050 (+) 678 WP_024052425.1 DUF1129 domain-containing protein -
  F6I35_RS09485 (F6I35_0009480) rpsR 1796230..1796469 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  F6I35_RS09490 (F6I35_0009485) ssb 1796506..1796997 (-) 492 WP_003026323.1 single-stranded DNA-binding protein Machinery gene
  F6I35_RS09495 (F6I35_0009490) rpsF 1797009..1797299 (-) 291 WP_003026325.1 30S ribosomal protein S6 -
  F6I35_RS09500 (F6I35_0009495) - 1797567..1798609 (+) 1043 Protein_1830 GtrA family protein -

Sequence

Protein


Download         Length: 941 a.a.        Molecular weight: 104114.18 Da        Isoelectric Point: 6.1097

>NTDB_id=812893 F6I35_RS09470 WP_070672619.1 1791465..1794290(-) (uvrA) [Streptococcus anginosus strain UMB8616]
MQDKIIIHGARAHNLKNIDVTIPRDKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGNMEKPDVDSIDGL
SPAISIDQKTTSKNPRSTVGTATEINDYLRLLYARVGTPYCINGHGAITASSVEQIVNQVLELPERQRLQILAPIVRKKK
GQHKTIFEKIQKDGYVRVRVDGDIYDVTEVPELSKTKKHDIEVVVDRIVIKDGVRSRLFDSIEAALRIADGYVVIDTRDD
KELLFSEHYACPVCGFTVPELEPRLFSFNAPFGSCPDCDGLGVKLEVDLDMVVPDSSKTLREGALAPWNPISSNYYPQML
EQAMTEFGIDMDKPFEELTEDEQQLIFFGSEGREFHFHYENEFGGVRDIDIPFEGVVTNINRRYHETNSDFTRTQMRTYM
NELTCASCHGYRLNPQALSVKVGGEGGLNIGQVSDLSIADHLELLSHLTLTENEVAIATPIIKEIRDRLTFLNNVGLNYL
TLSRSAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNNRLIASLKKMRDLGNTLIVVEHDEDTMREADWLI
DVGPGAGVFGGEIVAAGTPEQVAKSKKSITGQYLSGKREIPVPLERRVGNGRFIEVTGAREHNLQNITARFPLGKFIAVT
GVSGSGKSTLVNSILKKAIAQKLNRNSDKPGKFKNISGIEHIDRLIDIDQSPIGRTPRSNSATYTGVFDDIRDLFAKTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGTRYNSETLEVHYKEKNIAQVLDMTVNDAVEFF
KHIPKIERKLQTIKDVGLDYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSFYILDEPTTGLHTEDIAKLLQVLSRFVD
DGNTVLVIEHNLDVIKTADHIIDLGPEGGIGGGTIIATGTPEEVAGNPESYTGQYLKEKLS

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=812893 F6I35_RS09470 WP_070672619.1 1791465..1794290(-) (uvrA) [Streptococcus anginosus strain UMB8616]
ATGCAGGATAAAATTATCATTCATGGAGCGCGAGCTCATAATTTAAAAAATATTGATGTCACAATTCCGCGAGACAAGCT
GGTTGTCGTGACTGGTTTGTCTGGTTCAGGCAAATCTAGCTTAGCTTTTGACACTCTCTATGCAGAGGGGCAACGTCGCT
ATGTAGAAAGTTTGTCTGCTTATGCTCGCCAATTTTTGGGCAATATGGAAAAACCAGACGTGGATTCAATTGACGGACTT
AGTCCAGCCATTTCTATTGATCAAAAAACGACCAGCAAGAATCCGCGGTCAACGGTTGGAACAGCTACGGAAATCAATGA
TTACCTTCGTTTGCTTTATGCACGTGTGGGAACTCCTTACTGTATCAATGGGCATGGAGCTATTACAGCTTCTTCTGTGG
AGCAGATTGTCAATCAGGTTTTGGAATTGCCAGAGCGTCAGCGGTTGCAAATCCTAGCGCCTATTGTTCGCAAGAAAAAA
GGGCAACACAAGACAATTTTTGAGAAAATTCAAAAAGACGGATACGTGCGTGTGCGCGTGGACGGAGATATTTATGATGT
CACAGAAGTTCCAGAGCTTTCTAAAACAAAAAAGCACGATATCGAAGTAGTGGTAGACCGGATTGTCATTAAGGACGGTG
TACGCAGTCGGTTATTTGATTCGATTGAAGCAGCCTTAAGAATTGCAGACGGTTATGTGGTGATTGACACGAGGGATGAC
AAGGAATTACTCTTTTCCGAGCATTATGCTTGTCCAGTCTGCGGCTTTACGGTACCTGAGTTGGAACCTCGTCTCTTTTC
TTTTAATGCACCATTTGGCTCTTGTCCTGATTGTGACGGTCTGGGTGTGAAGCTGGAAGTGGACTTGGATATGGTGGTTC
CTGACAGTAGTAAGACCTTGCGGGAAGGCGCCTTAGCTCCATGGAATCCTATTTCTTCAAATTATTATCCTCAAATGCTA
GAACAGGCAATGACGGAATTTGGTATCGATATGGATAAGCCATTTGAGGAACTGACCGAAGATGAACAACAACTAATCTT
CTTTGGTTCTGAAGGACGAGAATTTCATTTTCATTATGAAAATGAATTCGGTGGCGTGCGAGATATCGACATCCCTTTTG
AAGGAGTGGTAACCAATATAAACCGTCGCTACCATGAGACCAATAGTGATTTCACTCGTACCCAGATGCGAACCTATATG
AATGAGCTGACCTGTGCAAGTTGCCATGGTTATCGATTGAATCCACAAGCCTTGTCTGTTAAAGTGGGGGGTGAAGGTGG
TCTTAATATTGGGCAAGTATCTGATTTATCTATTGCAGATCATTTAGAATTACTTTCTCATCTGACTTTGACTGAAAATG
AAGTAGCCATTGCAACACCAATTATCAAAGAAATCCGAGATCGCTTGACATTTCTTAATAATGTCGGACTTAATTATCTA
ACTCTATCTCGTTCTGCAGGCACGCTGTCTGGTGGTGAGAGTCAGCGGATTCGCTTGGCGACTCAAATCGGCTCTAATCT
CAGCGGTGTTCTTTATATCTTAGATGAGCCTTCTATCGGTCTTCATCAGCGCGATAATAATCGCTTGATTGCCAGTCTCA
AAAAAATGCGTGATTTGGGCAATACTCTCATTGTGGTTGAACATGATGAAGATACTATGCGCGAAGCTGATTGGTTGATT
GATGTTGGACCTGGAGCAGGTGTTTTTGGTGGTGAAATTGTTGCGGCAGGCACTCCAGAGCAAGTTGCAAAAAGCAAGAA
ATCAATTACAGGTCAGTATTTATCGGGCAAACGTGAAATTCCAGTGCCATTGGAGCGCCGCGTAGGAAACGGCCGCTTTA
TTGAAGTAACAGGTGCGCGAGAGCACAATTTGCAAAACATCACGGCCCGCTTCCCGTTAGGAAAATTTATAGCCGTGACG
GGGGTTTCTGGTTCTGGTAAATCCACCTTGGTTAATTCCATTTTGAAAAAAGCAATCGCTCAAAAACTCAATCGTAATTC
AGATAAACCGGGTAAATTCAAAAATATTTCAGGAATTGAGCATATTGATCGTTTGATTGATATTGACCAGAGCCCGATTG
GCCGAACACCAAGATCCAATTCAGCGACGTATACTGGCGTCTTTGATGATATTCGCGATCTCTTTGCTAAGACCAACGAA
GCTAAGATTCGTGGGTATAAAAAGGGGCGTTTCTCTTTCAATGTGAAGGGGGGACGCTGCGAGGCCTGCTCTGGGGATGG
AATTATCAAGATTGAGATGCACTTTTTACCAGATGTTTATGTCCCTTGTGAGGTTTGCCATGGAACACGGTACAATAGTG
AAACCTTGGAAGTGCACTACAAGGAGAAAAACATTGCTCAAGTTTTGGATATGACGGTCAATGATGCAGTAGAATTTTTT
AAGCATATTCCAAAAATCGAGCGGAAGTTGCAGACGATTAAAGATGTTGGGTTAGACTATGTGACCTTGGGGCAACCTGC
CACAACTCTGTCTGGTGGGGAGGCTCAGCGGATGAAACTAGCCAGCGAACTTCATAAGCGCTCAACAGGTAAGTCTTTCT
ATATTCTGGATGAACCAACTACAGGTCTGCACACGGAGGATATTGCGAAACTTCTCCAAGTGCTATCACGTTTTGTAGAT
GATGGCAACACGGTTCTCGTCATCGAGCATAATTTGGACGTTATTAAGACGGCCGATCACATTATTGACCTTGGACCAGA
AGGTGGTATTGGTGGAGGTACTATTATCGCAACTGGCACACCAGAAGAAGTAGCTGGAAATCCAGAAAGCTATACAGGTC
AGTATCTAAAAGAAAAATTGAGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(624-860)

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-397)

UvrA interaction domain (UvrA_inter)

(132-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

89.043

99.894

0.889
  uvrA Streptococcus pneumoniae TIGR4

89.043

99.894

0.889
  uvrA Streptococcus pneumoniae D39

89.043

99.894

0.889