Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   KI220_RS09100 Genome accession   NZ_AP023088
Coordinates   1860562..1861353 (+) Length   263 a.a.
NCBI ID   WP_048350619.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain RSC-1     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 1855562..1866353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI220_RS09070 (RSC1_01813) - 1856742..1857638 (+) 897 WP_020450616.1 PhzF family phenazine biosynthesis isomerase -
  KI220_RS09075 (RSC1_01814) - 1857741..1858319 (+) 579 WP_020450617.1 nitroreductase -
  KI220_RS09080 (RSC1_01815) - 1858353..1858547 (-) 195 WP_020450618.1 YfhD family protein -
  KI220_RS09085 - 1858616..1858729 (-) 114 WP_023856002.1 YfhE family protein -
  KI220_RS09090 (RSC1_01816) - 1858797..1859327 (-) 531 WP_020450619.1 GNAT family N-acetyltransferase -
  KI220_RS09095 (RSC1_01817) - 1859594..1860493 (-) 900 WP_048350615.1 TIGR01777 family oxidoreductase -
  KI220_RS09100 (RSC1_01818) recX 1860562..1861353 (+) 792 WP_048350619.1 recombination regulator RecX Regulator
  KI220_RS09105 (RSC1_01819) - 1861358..1861672 (+) 315 WP_025810180.1 YfhH family protein -
  KI220_RS09110 (RSC1_01820) - 1861702..1861872 (-) 171 WP_003179922.1 YpzG family protein -
  KI220_RS09115 (RSC1_01821) - 1861899..1862048 (-) 150 WP_003179924.1 small, acid-soluble spore protein K -
  KI220_RS09120 (RSC1_01822) - 1862179..1862448 (+) 270 WP_020450622.1 YfhJ family protein -
  KI220_RS09125 (RSC1_01824) - 1863191..1864150 (+) 960 WP_048350614.1 glycosyltransferase family 2 protein -
  KI220_RS09130 (RSC1_01825) - 1864119..1864520 (+) 402 WP_020450624.1 GtrA family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30392.61 Da        Isoelectric Point: 6.7703

>NTDB_id=81285 KI220_RS09100 WP_048350619.1 1860562..1861353(+) (recX) [Bacillus paralicheniformis strain RSC-1]
MPYITKISAQKNNEERVNIFLDEKYAFSVDLDVLVKFDLRKGKELDELDIIEIQYGDDVKKGFKRALDYLSYRMRSTKEV
KDHLKKKDVADSAITEILHMLKGYKYLDDREFAAAYVSTHRKTSGKGPDVLFRELKLKGIDDELIQEALSSFSFSDQVEA
AVKHAEKVLKKEKKLSSKETKQAIEQHLVRKGFSFDVISAALQETDYENDDSAEREALEKQGEKAMKRCGYDGSYETKMK
VKQHLFRKGFSIDMIDQFLDEKG

Nucleotide


Download         Length: 792 bp        

>NTDB_id=81285 KI220_RS09100 WP_048350619.1 1860562..1861353(+) (recX) [Bacillus paralicheniformis strain RSC-1]
ATGCCATATATTACAAAGATTTCTGCCCAGAAAAACAATGAAGAACGGGTCAATATTTTTCTGGATGAAAAGTATGCGTT
CAGCGTCGACCTGGACGTGCTCGTCAAGTTTGACCTGCGAAAAGGCAAAGAGCTTGATGAGCTTGATATCATTGAGATTC
AGTACGGAGACGACGTTAAAAAAGGGTTCAAAAGAGCGCTCGATTATTTGTCATACCGGATGCGCTCGACAAAGGAAGTT
AAAGACCATCTCAAGAAAAAAGACGTCGCAGACTCCGCGATCACAGAAATCCTGCATATGCTTAAAGGTTATAAATATTT
GGACGACCGCGAATTTGCGGCTGCATATGTCAGCACCCACAGAAAAACGAGCGGCAAAGGCCCCGATGTCCTATTCAGAG
AGCTTAAATTGAAAGGGATCGATGATGAACTGATTCAGGAAGCGCTCAGTTCGTTTTCGTTTTCCGATCAGGTCGAGGCC
GCGGTCAAGCATGCGGAAAAAGTGCTGAAAAAAGAAAAAAAGCTGTCCTCCAAAGAGACGAAACAGGCCATCGAACAGCA
CCTTGTCAGAAAGGGGTTCTCCTTCGATGTCATCTCGGCCGCGCTTCAGGAAACGGATTACGAAAACGACGACAGCGCTG
AAAGGGAAGCGCTTGAGAAGCAAGGGGAAAAAGCGATGAAGAGGTGCGGTTATGACGGATCATACGAAACGAAAATGAAG
GTCAAACAGCATCTGTTCAGAAAAGGCTTTTCAATCGACATGATTGATCAATTTTTAGATGAAAAGGGATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

70.881

99.24

0.703

Multiple sequence alignment