Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   KI220_RS06900 Genome accession   NZ_AP023088
Coordinates   1392306..1393259 (+) Length   317 a.a.
NCBI ID   WP_026580546.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain RSC-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1387306..1398259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI220_RS06885 (RSC1_01370) - 1387354..1388781 (+) 1428 WP_039073204.1 HAMP domain-containing sensor histidine kinase -
  KI220_RS06890 (RSC1_01371) - 1388813..1390531 (-) 1719 WP_048350563.1 methyl-accepting chemotaxis protein -
  KI220_RS06895 (RSC1_01372) - 1390667..1392028 (-) 1362 WP_026580545.1 aspartate kinase -
  KI220_RS06900 (RSC1_01374) ceuB 1392306..1393259 (+) 954 WP_026580546.1 ABC transporter permease Machinery gene
  KI220_RS06905 (RSC1_01375) - 1393249..1394193 (+) 945 WP_020450171.1 iron chelate uptake ABC transporter family permease subunit -
  KI220_RS06910 (RSC1_01376) - 1394193..1394951 (+) 759 WP_020450172.1 ABC transporter ATP-binding protein -
  KI220_RS06915 (RSC1_01377) - 1394966..1395913 (+) 948 WP_035337207.1 siderophore ABC transporter substrate-binding protein -
  KI220_RS06920 (RSC1_01378) - 1396095..1397516 (-) 1422 WP_026580547.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35107.47 Da        Isoelectric Point: 10.1004

>NTDB_id=81283 KI220_RS06900 WP_026580546.1 1392306..1393259(+) (ceuB) [Bacillus paralicheniformis strain RSC-1]
MKLRYLLLMLIILSISSIFIGVKELSPLDLFRFNEDEIQTLYISRIPRLISIVLAGMSLSICGLIMQQLTRNKFVSPTTA
GTMDWARLGVIIAIVLFSSAGIVVKILFAFVFALFGSFLFVKILDRIKFKDAIFIPLVGMMLGSVVSAISTFMAYQYNII
QNVNAWFEGNFSLVMKGRYELLFLSIPLVIIAYLFANKFTLAGMGESFSINLGLNYKRVVNIGLIIVSIISSVVILTVGT
LPFLGLIIPNIVSIYRGDHLKNSLPHTAVLGAVFVLFCDIAGRLVIYPYEISVGLMVGIIGSGVFLYLLLRRKAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=81283 KI220_RS06900 WP_026580546.1 1392306..1393259(+) (ceuB) [Bacillus paralicheniformis strain RSC-1]
ATGAAATTACGATACTTATTGCTAATGCTCATCATTCTTTCAATCAGCTCGATTTTCATCGGCGTTAAGGAGCTTTCGCC
TCTTGATCTTTTCCGCTTTAACGAGGACGAAATTCAAACGCTTTACATAAGCAGAATTCCGCGCTTGATTAGCATCGTGC
TTGCGGGAATGAGCTTGAGCATTTGCGGGCTGATCATGCAGCAGCTGACGCGCAATAAATTTGTTTCACCGACCACCGCT
GGAACGATGGATTGGGCGAGGCTCGGTGTGATCATTGCGATCGTGCTTTTTTCGTCTGCAGGAATTGTGGTTAAAATACT
GTTTGCCTTTGTTTTTGCACTGTTTGGCAGTTTTTTGTTCGTCAAAATTTTGGACAGAATCAAGTTCAAAGATGCGATCT
TCATCCCTCTCGTCGGTATGATGCTCGGAAGTGTTGTCAGCGCCATCTCCACTTTCATGGCTTATCAGTACAATATCATT
CAAAACGTCAATGCATGGTTTGAAGGGAATTTTTCGCTTGTCATGAAGGGGAGGTATGAGCTCTTATTTCTGAGTATACC
GCTCGTTATCATTGCCTATCTGTTCGCCAATAAATTTACGTTGGCCGGGATGGGGGAGTCTTTTTCCATCAATCTTGGAT
TGAATTATAAGCGGGTGGTCAATATCGGATTGATCATCGTATCTATTATTTCGTCCGTCGTCATCCTGACGGTCGGCACG
CTTCCCTTTTTGGGATTGATCATCCCGAACATCGTGTCCATCTACAGGGGAGATCATTTGAAAAACAGCCTGCCTCATAC
GGCGGTTCTCGGAGCCGTTTTCGTCTTGTTTTGCGATATAGCGGGACGTCTCGTCATTTACCCGTACGAAATTTCGGTTG
GTTTGATGGTCGGCATCATCGGGAGCGGCGTTTTTCTTTACTTGCTTTTAAGGAGAAAAGCCTATGCGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.582

99.685

0.514

Multiple sequence alignment