Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KI220_RS04795 Genome accession   NZ_AP023088
Coordinates   969507..969797 (-) Length   96 a.a.
NCBI ID   WP_085959887.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain RSC-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 964507..974797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI220_RS04755 (RSC1_00955) - 964530..964859 (+) 330 WP_003178156.1 cyclic-di-AMP receptor -
  KI220_RS04760 (RSC1_00956) - 964871..965311 (+) 441 WP_020449792.1 YaaR family protein -
  KI220_RS04765 (RSC1_00957) holB 965323..966312 (+) 990 WP_020449793.1 DNA polymerase III subunit delta' -
  KI220_RS04770 (RSC1_00958) - 966315..967142 (+) 828 WP_020449794.1 stage 0 sporulation family protein -
  KI220_RS04775 (RSC1_00959) yabA 967157..967519 (+) 363 WP_020449795.1 DNA replication initiation control protein YabA -
  KI220_RS04780 (RSC1_00960) - 967584..968327 (+) 744 WP_020449796.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  KI220_RS04785 - 968314..968607 (+) 294 WP_020449797.1 GIY-YIG nuclease family protein -
  KI220_RS04790 (RSC1_00961) rsmI 968582..969457 (+) 876 WP_142238597.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  KI220_RS04795 (RSC1_00962) abrB 969507..969797 (-) 291 WP_085959887.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  KI220_RS04800 (RSC1_00963) metG 970305..972293 (+) 1989 WP_035337513.1 methionine--tRNA ligase -
  KI220_RS04805 (RSC1_00964) - 972378..973145 (+) 768 WP_212791762.1 TatD family hydrolase -
  KI220_RS04810 (RSC1_00965) - 973390..974586 (+) 1197 WP_212791763.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10680.43 Da        Isoelectric Point: 5.1848

>NTDB_id=81277 KI220_RS04795 WP_085959887.1 969507..969797(-) (abrB) [Bacillus paralicheniformis strain RSC-1]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=81277 KI220_RS04795 WP_085959887.1 969507..969797(-) (abrB) [Bacillus paralicheniformis strain RSC-1]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAGCTAGGACGCGTGGTGATTCCGATCGAACTTCGCCGTAC
GCTTGGAATCGCGGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment