Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RUU60_RS14655 Genome accession   NZ_CP136025
Coordinates   2975876..2976505 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain GDSC2BY4G     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2970876..2981505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUU60_RS14640 (RUU60_14640) helD 2971118..2973172 (-) 2055 WP_001295354.1 DNA helicase IV -
  RUU60_RS14645 (RUU60_14645) yccF 2973295..2973741 (+) 447 WP_001261235.1 YccF domain-containing protein -
  RUU60_RS14650 (RUU60_14650) yccS 2973751..2975913 (+) 2163 WP_000875061.1 YccS family putative transporter -
  RUU60_RS14655 (RUU60_14655) sxy/tfoX 2975876..2976505 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RUU60_RS14660 (RUU60_14660) sulA 2976724..2977233 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RUU60_RS14665 (RUU60_14665) ompA 2977590..2978642 (+) 1053 WP_001307702.1 porin OmpA -
  RUU60_RS14670 (RUU60_14670) matP 2978718..2979170 (-) 453 WP_000877162.1 macrodomain Ter protein MatP -
  RUU60_RS14675 (RUU60_14675) ycbZ 2979356..2981116 (+) 1761 WP_000156471.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=812761 RUU60_RS14655 WP_000839153.1 2975876..2976505(-) (sxy/tfoX) [Escherichia coli strain GDSC2BY4G]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=812761 RUU60_RS14655 WP_000839153.1 2975876..2976505(-) (sxy/tfoX) [Escherichia coli strain GDSC2BY4G]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1