Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   RUW23_RS12635 Genome accession   NZ_CP136014
Coordinates   2678383..2679408 (-) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain R18-20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2673383..2684408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUW23_RS12610 (RUW23_12610) aroE 2673585..2674409 (-) 825 WP_003111201.1 shikimate dehydrogenase -
  RUW23_RS12615 (RUW23_12615) hemF 2674467..2675384 (-) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  RUW23_RS12620 (RUW23_12620) - 2675575..2676552 (+) 978 WP_003111202.1 NADPH:quinone reductase -
  RUW23_RS12625 (RUW23_12625) - 2676562..2677119 (-) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  RUW23_RS12630 (RUW23_12630) dprA 2677160..2678248 (-) 1089 WP_003123764.1 DNA-processing protein DprA Machinery gene
  RUW23_RS12635 (RUW23_12635) tsaP 2678383..2679408 (-) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  RUW23_RS12640 (RUW23_12640) def 2679547..2680053 (+) 507 WP_003107059.1 peptide deformylase -
  RUW23_RS12645 (RUW23_12645) fmt 2680108..2681052 (+) 945 WP_023089593.1 methionyl-tRNA formyltransferase -
  RUW23_RS12650 (RUW23_12650) rsmB 2681049..2682353 (+) 1305 WP_023092224.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  RUW23_RS12655 (RUW23_12655) trkA 2682381..2683754 (+) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  RUW23_RS12660 (RUW23_12660) - 2683903..2684220 (+) 318 WP_003120685.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=812652 RUW23_RS12635 WP_003097294.1 2678383..2679408(-) (tsaP) [Pseudomonas aeruginosa strain R18-20]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=812652 RUW23_RS12635 WP_003097294.1 2678383..2679408(-) (tsaP) [Pseudomonas aeruginosa strain R18-20]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGGCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCT
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393